GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002057-TA|BGIBMGA002057-PA|undefined
         (109 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0139 - 20531320-20531433,20532146-20532276,20533031-205333...    27   3.2  
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464     27   4.3  

>11_06_0139 -
           20531320-20531433,20532146-20532276,20533031-20533382,
           20533384-20533527,20533726-20533875,20534197-20534204,
           20534267-20534471
          Length = 367

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 5   TGRDLSILISAARPSIALVRRLSWANSRIIGLNFSLLSLGVR 46
           T R+  + IS    SI  VRR  W +++ + ++ +  S+GVR
Sbjct: 117 TTREKYVAISHTATSIG-VRRARWFSNQYVAISHTATSIGVR 157


>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
          Length = 504

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 75  GDLNGAKAGADTDRDAGE 92
           G+++G+  GADTD D GE
Sbjct: 450 GNVDGSFVGADTDTDGGE 467


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,379
Number of Sequences: 37544
Number of extensions: 57046
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 2
length of query: 109
length of database: 14,793,348
effective HSP length: 72
effective length of query: 37
effective length of database: 12,090,180
effective search space: 447336660
effective search space used: 447336660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)