GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002057-TA|BGIBMGA002057-PA|undefined
         (109 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.     30   0.30 
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso...    30   0.30 
AF106579-3|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    30   0.30 
AF106579-2|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    30   0.30 
AF106579-1|AAC78200.4| 4889|Caenorhabditis elegans Kettin (droso...    30   0.30 
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.     30   0.30 
Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical pr...    25   8.6  

>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
          Length = 4250

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 78   NGAKAGADTDRDAGESSGVVVQPQEETK 105
            N  +A   T  +  ESSG+++QPQ E K
Sbjct: 2755 NSGEASTSTSFEVSESSGLILQPQNEQK 2782


>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform b protein.
          Length = 4203

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 78   NGAKAGADTDRDAGESSGVVVQPQEETK 105
            N  +A   T  +  ESSG+++QPQ E K
Sbjct: 2672 NSGEASTSTSFEVSESSGLILQPQNEQK 2699


>AF106579-3|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform d protein.
          Length = 4369

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 78   NGAKAGADTDRDAGESSGVVVQPQEETK 105
            N  +A   T  +  ESSG+++QPQ E K
Sbjct: 2993 NSGEASTSTSFEVSESSGLILQPQNEQK 3020


>AF106579-2|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform c protein.
          Length = 4447

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 78   NGAKAGADTDRDAGESSGVVVQPQEETK 105
            N  +A   T  +  ESSG+++QPQ E K
Sbjct: 2993 NSGEASTSTSFEVSESSGLILQPQNEQK 3020


>AF106579-1|AAC78200.4| 4889|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform a protein.
          Length = 4889

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 78   NGAKAGADTDRDAGESSGVVVQPQEETK 105
            N  +A   T  +  ESSG+++QPQ E K
Sbjct: 3394 NSGEASTSTSFEVSESSGLILQPQNEQK 3421


>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
          Length = 4219

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 78   NGAKAGADTDRDAGESSGVVVQPQEETK 105
            N  +A   T  +  ESSG+++QPQ E K
Sbjct: 2688 NSGEASTSTSFEVSESSGLILQPQNEQK 2715


>Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical
           protein C07A4.3 protein.
          Length = 363

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 25  RLSWANSRIIGLNFSLLSLGVRVHV 49
           +L W NSR IG+  S+   G   HV
Sbjct: 303 QLLWKNSRKIGVGVSVAKRGTMYHV 327


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.133    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,243
Number of Sequences: 27539
Number of extensions: 39462
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 7
length of query: 109
length of database: 12,573,161
effective HSP length: 72
effective length of query: 37
effective length of database: 10,590,353
effective search space: 391843061
effective search space used: 391843061
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)