GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002057-TA|BGIBMGA002057-PA|undefined
         (109 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55680.1 68418.m06942 glycine-rich protein                          26   4.8  
At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly...    26   4.8  
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila...    26   6.3  

>At5g55680.1 68418.m06942 glycine-rich protein 
          Length = 208

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/30 (46%), Positives = 15/30 (50%)

Query: 75  GDLNGAKAGADTDRDAGESSGVVVQPQEET 104
           GD  G   G DT   AG  +GVV    EET
Sbjct: 54  GDFPGIVVGGDTGEVAGVETGVVDVVGEET 83


>At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly
           identical to histone acetyltransferase GCN5 [Arabidopsis
           thaliana] GI:13591696; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00439: Bromodomain
          Length = 568

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 83  GADTDRDAGESSGVVVQPQEE 103
           GADTD D  ES  +VV   E+
Sbjct: 87  GADTDSDPDESEDIVVDDDED 107


>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
           to SP|P36175 O-sialoglycoprotein endopeptidase (EC
           3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
           contains Pfam profile PF00814: Glycoprotease family
          Length = 480

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 5   TGRDLSILISAARPSIALVRRLSWANSRIIGLNFSLLSLGV 45
           T +DLS +     P ++L  R+    +R +  NFSL  +GV
Sbjct: 152 TEKDLSAVAVTIGPGLSLCLRVGVRKARRVAGNFSLPIVGV 192


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,051
Number of Sequences: 28952
Number of extensions: 43090
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 3
length of query: 109
length of database: 12,070,560
effective HSP length: 71
effective length of query: 38
effective length of database: 10,014,968
effective search space: 380568784
effective search space used: 380568784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)