Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002055-TA|BGIBMGA002055-PA|undefined
         (162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   1.8  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   5.5  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   7.3  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   7.3  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    24   9.6  

>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 21  LKLLSKENCALLEKIHKNNPKDNRVFDVTQAQELINKLEDY 61
           L+   KE    ++  + ++ +D+   DVT A  L NK  DY
Sbjct: 334 LRAKQKEESEFMDSENVDDEEDDDFLDVTTATSLQNKSTDY 374


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 14  IKRLQGELKL--LSKENCALLEKI--HKNNPKDNRVFDVTQAQELINKLED 60
           ++ L GEL     SK+N A ++KI  HKN  K  R FD+T      N L+D
Sbjct: 339 VEVLSGELSFEPQSKKNKAKVQKIVSHKNQRK--RWFDLTDVDPYTN-LQD 386


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/61 (21%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 4   DQNLETCRAQIKRLQGELKLLSK---ENCALLEKIHKNNPKDNRVFDVTQAQELINKLED 60
           D N +T   +++ +Q EL+ + +   E  A+ +  ++   +++++FD  +  E+++ + D
Sbjct: 322 DHN-DTRLKRLEHVQSELQAVEQAIQEASAVHDAFNQRVREESKLFDSVRQSEMLSAISD 380

Query: 61  Y 61
           Y
Sbjct: 381 Y 381


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 12  AQIKRLQGELKLLSKENCALLEKIHKNNPKDNRVFDVTQAQELINKLEDY 61
           + I++ + EL + + E   +++ IH+   KD  +   + A + I+ + DY
Sbjct: 67  SSIEKKKSELIVRNSEGLPVMD-IHEEVDKDGNIISASVAPQRISSVIDY 115


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 6   NLETCRAQIKRLQGELKLLSKENCALLE 33
           +LET R Q++ LQ EL++  +E   L++
Sbjct: 429 DLETLRLQLQALQEELRVEREERQQLIQ 456


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,247
Number of Sequences: 5004
Number of extensions: 15903
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 5
length of query: 162
length of database: 2,362,478
effective HSP length: 68
effective length of query: 94
effective length of database: 2,022,206
effective search space: 190087364
effective search space used: 190087364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)