GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002055-TA|BGIBMGA002055-PA|undefined
         (162 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0323 + 2425472-2425527,2426397-2426694                           29   2.4  
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297...    27   7.3  

>11_01_0323 + 2425472-2425527,2426397-2426694
          Length = 117

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)

Query: 15 KRLQGELKLLSKENCALLEKIH-KNNP 40
          +RL+ + +LL KEN ALL K+  KNNP
Sbjct: 45 ERLRKKAQLLDKENKALLAKLKLKNNP 71


>01_04_0018 +
           15128174-15128316,15128445-15128544,15129573-15129758,
           15129877-15129924,15130006-15130209,15130476-15130565,
           15130667-15130747,15130827-15130889,15131794-15131832,
           15131914-15132000,15132103-15132252,15132331-15132386,
           15132493-15132775,15132989-15133132,15133233-15133451,
           15133528-15133695,15133868-15133969
          Length = 720

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 16  RLQGELK--LLSKENCALLEKIHKNNPKDNRVFDVTQAQELINKLEDYKCSSVDL 68
           +++G LK   L+KE+ +  E+   NNP+ N + D+            YK S ++L
Sbjct: 452 KMEGMLKDITLAKEHQSSFEEYVSNNPESNPLIDLNVTVLTTGYWPTYKNSDINL 506


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,823,404
Number of Sequences: 37544
Number of extensions: 109699
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 2
length of query: 162
length of database: 14,793,348
effective HSP length: 77
effective length of query: 85
effective length of database: 11,902,460
effective search space: 1011709100
effective search space used: 1011709100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)