Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002055-TA|BGIBMGA002055-PA|undefined
(162 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 29 1.4
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_50148| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_18620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 27 7.5
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 27 7.5
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 27 9.9
SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33) 27 9.9
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/57 (28%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 5 QNLETCRAQIKRLQGELKLLSKENCALLEKIHKNNPK--DNRVFDVTQAQELINKLE 59
Q+LET +++ +L+ + KLL +N L +++++ + K DN ++ + Q++I +L+
Sbjct: 1627 QDLETLQSKYDKLERQNKLLQDQNSQLQQQLNERDRKLRDNE-DEIMELQKVIEELK 1682
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/60 (25%), Positives = 36/60 (60%)
Query: 7 LETCRAQIKRLQGELKLLSKENCALLEKIHKNNPKDNRVFDVTQAQELINKLEDYKCSSV 66
++T + ++ L+ +LK S + L+EK+ + + ++V +V QA+E + K + + S++
Sbjct: 1139 VDTMQVELVALEPQLKQKSLDVEKLMEKLQVDQEEADKVRNVVQAEEAVAKEKADETSAI 1198
>SB_50148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 606
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 17 LQGELKLLSKENCALLEKIHKNNPKDNRVFDVTQAQELINKLED 60
L G KLLS + L K +K PKDN+ D + +LE+
Sbjct: 433 LGGTFKLLSAISFFLAWKYYKLPPKDNKALDNVVENSIATELEN 476
>SB_18620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 10 CRAQIKRLQGELKLLSKENCALLEKIHKNNPKDNRVFDVTQ 50
C + ++ G+L L +N L K H + P+DN +T+
Sbjct: 30 CTTRFIQVDGKLSLEDDKNLCLSPKYHMSTPQDNEPLAMTR 70
>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 3 KDQNLETCRAQIKRLQGELKLLSKENCALLEKIHKNNPKDNRVFDVTQAQELINKLEDYK 62
K E C I+R + ++ L E LL K N FD+ Q+ IN+L D +
Sbjct: 34 KKSYTEDCENVIRRQEDTIQALQAERTELLTFYRVAGRKYNECFDLNNLQD-INELMDRE 92
Query: 63 CS-SVDLA 69
VD+A
Sbjct: 93 DQLKVDIA 100
>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
Length = 1279
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 3 KDQNLETCRAQIK-----RLQGELKL--LSKENCALLEKIHKNN 39
KD +LE R K +L+ E +L LSKE C EK+ K N
Sbjct: 929 KDSDLEVLRRDFKEAENSKLETERQLSELSKETCHYKEKVEKQN 972
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 1 MTKDQNLETCRAQIKRLQGELKLLSKENCALLEKIHKNNPKDNRVFDVTQA 51
+++ +E R +K Q ++ L+K+N AL EK+ + ++V ++ QA
Sbjct: 518 LSETSQMENLRENLKLKQMTVQQLNKDNEALREKLSSSVQIHDKVAELEQA 568
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 1 MTKDQNLETCRAQIKRLQGELKLLSKENCALLEKIHKN-------NPKDNRVFDVTQAQE 53
+T Q+ + A +K L GEL L + L E++ + +DNR + + +E
Sbjct: 146 LTTRQSKQMIHASVKVLSGELNLTPHQRKGLRERVTSHVRARLELEDEDNRDARLRRLEE 205
Query: 54 LI-NKLEDYKCSSVDL 68
L+ +E Y S++ L
Sbjct: 206 LVEGDMEKYHLSALKL 221
>SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)
Length = 412
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 13 QIKRLQGELKLLSKENCALLEKIHKNN 39
+++RLQGE LLS E C + K +NN
Sbjct: 289 KLERLQGESGLLSPEECFEVLKNTQNN 315
>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 2 TKDQNLETCRAQIKRLQGELKLLSKEN 28
T+DQ +E+ RA++++ + ELK +N
Sbjct: 161 TQDQEIESLRAELRKSKAELKAGRSQN 187
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 4 DQNLETCRAQIKRLQGELKLLSKENCALLEKIHKNNPKDNRVFDVTQAQEL-INKLED 60
++ ++T + I+ LQ + L +EN L EK+ + + + + T+ Q + + +L D
Sbjct: 2884 NEQMKTQKRNIQELQRNVSKLEEENAVLEEKVKLLDEASSNLKNQTEVQTVELKRLRD 2941
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,356,487
Number of Sequences: 59808
Number of extensions: 120913
Number of successful extensions: 381
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 15
length of query: 162
length of database: 16,821,457
effective HSP length: 77
effective length of query: 85
effective length of database: 12,216,241
effective search space: 1038380485
effective search space used: 1038380485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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