GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002055-TA|BGIBMGA002055-PA|undefined
         (162 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    25   0.88 

>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 2   TKDQNLETCRAQIKRLQGELKLLSKENCALLEKI 35
           T    LE  RA I+RL+ +   + ++N  LLE+I
Sbjct: 112 TPAPELELLRATIQRLEEQNCAMKEQNAKLLEQI 145



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 148 VCPCVSQREALPPT 161
           +C CVS+  A PPT
Sbjct: 488 LCDCVSKVRAAPPT 501


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,116
Number of Sequences: 2123
Number of extensions: 3257
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 162
length of database: 516,269
effective HSP length: 59
effective length of query: 103
effective length of database: 391,012
effective search space: 40274236
effective search space used: 40274236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)