GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002055-TA|BGIBMGA002055-PA|undefined
         (162 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    27   8.6  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    27   8.6  
AC025715-4|AAP13754.1|  301|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical
           protein W03G11.3 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 22  KLLSK--ENCALLEKIHKNNPKDNRVFDVTQAQELINKL 58
           KLL K  ENC  L+K    N +D +  +V  A E+I +L
Sbjct: 267 KLLEKKWENCMTLDKHSWGNRRDMKASEVNTAYEIIEQL 305


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 3   KDQNLETCRAQIKRLQGELKLLSKENCALLEKIHKNNPKDNRVFDVTQAQELINKLEDYK 62
           K  N+E   AQ+ ++Q EL  +++E+  + +K+       +R F     + LI+ +ED +
Sbjct: 615 KQANVEKAVAQLNKIQEELANVAEESIEIPQKV------QSRFFG--NGRRLISDIED-E 665

Query: 63  CSSVDLAF 70
           C  V + F
Sbjct: 666 CGGVHIRF 673


>Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical
          protein F53B7.4 protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 3  KDQNLETCRAQIKRLQGELKLLSKENCALLEKIHKNNPKD 42
          +D+  E C  +I+ L G L L+S  N  +       NP +
Sbjct: 43 QDETSEVCEIEIQSLNGNLILVSITNFLMFSHRRPRNPNE 82


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 46  FDVTQAQELINKLEDYKCSSVDL 68
           FDV  A+E+I+ + D  C+ VDL
Sbjct: 683 FDVPTAKEIIHLVSDTVCAKVDL 705


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 46  FDVTQAQELINKLEDYKCSSVDL 68
           FDV  A+E+I+ + D  C+ VDL
Sbjct: 683 FDVPTAKEIIHLVSDTVCAKVDL 705


>AC025715-4|AAP13754.1|  301|Caenorhabditis elegans Hypothetical
          protein Y38F2AR.13 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 22 KLLSKENCAL-LEKIHKNNPKDNRVFDVTQAQELINKLEDY 61
          K+   EN  L  E+IH N  K  R FD  Q+ E + ++ D+
Sbjct: 24 KIRHLENSDLHFERIHVNLAKKERFFDDVQSDEKLAEICDF 64


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,952
Number of Sequences: 27539
Number of extensions: 96724
Number of successful extensions: 288
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 6
length of query: 162
length of database: 12,573,161
effective HSP length: 76
effective length of query: 86
effective length of database: 10,480,197
effective search space: 901296942
effective search space used: 901296942
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)