GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002054-TA|BGIBMGA002054-PA|undefined
         (225 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    33   0.045
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   1.7  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    27   2.2  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.2  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.2  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   2.2  
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    27   3.0  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   3.9  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   3.9  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   5.2  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    26   5.2  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   5.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   5.2  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   6.8  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    25   6.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.1  

>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 32.7 bits (71), Expect = 0.045
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 15  ETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKE 60
           E+  + N++  S+ S E   E+L   E+ +P +S S S S++ TK+
Sbjct: 231 ESITRKNSIGMSTRSDESTAEKLAKAEVATPTNSRSISHSSLYTKQ 276


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 50  SASESNIPTKEHALKIEQFPNW-NKSQIPVAIHKTGT-DTSGDMQANTLRDLKRCKPCKD 107
           + S +N+P K HAL  +   N+ NK  +P+A   T    T+  +      + K   P  D
Sbjct: 49  TVSSTNVPKKRHAL--DDVSNFHNKEGVPLASKNTNVRHTTASVSTRRALEEKSIIPATD 106

Query: 108 HDVEGLQDWKPEVIGKN 124
            +    +  +P V   +
Sbjct: 107 DEPASKKRRQPSVFNSS 123


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 4   IRSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKS 44
           +RS  +L    ++   S AVD SS SP  P    QA E++S
Sbjct: 158 LRSSEKLNRNLQSVLSSEAVDSSSGSPSPPMALSQA-EIRS 197


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 9  RLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQF 68
          RLG  +E       V + + +PE+P+    + ++KS ++ +      +  +E  L+ E F
Sbjct: 25 RLGAEREKEAVERIVQEENQNPEVPSNDDASTDIKSRKEGN----MKVTAEEIGLETENF 80


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 5   RSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALK 64
           RSK  + L  E    S A  ++ S    P+ER Q+ ELK  + S    +  +  +   +K
Sbjct: 854 RSKKAIQLELENL-SSQAFRRNLSGSSSPSERSQSRELKLLQASEKRLKEQVEERNSLIK 912

Query: 65  --IEQFPNWNKSQIPVAIHKTGTDTSGDM 91
             + +F   N    PV  +     T   M
Sbjct: 913 NIVTRFTQLNTGSKPVNTNVEALTTISSM 941


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 12  LRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIP 57
           L+  T+P   A  Q S+ P+ P E   + ++K  +  H  +E N P
Sbjct: 264 LKSSTAPSDLATPQPSTFPQPPVESHSSFDIKQ-KILHLLNEGNEP 308


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 87  TSGDMQANTLRDLKRCKPCKDHDVEGLQDWKPEVI 121
           T GD+    +  LK+C+P  + DVE L D   EV+
Sbjct: 19  TLGDVD-RWIEQLKKCEPLSEADVEMLCDKAREVL 52


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 6   SKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKE 60
           S+  + ++ E   +S++   SSS  E   E +  +E K    S S+SES+    E
Sbjct: 122 SEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESE 176


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 27  SSSPEIPTERLQALELKSPRDSHSASESNIP-TKEHALKIEQ 67
           SS+ + P+ER  ALE K   DS SA  S    T +H  + E+
Sbjct: 299 SSTSQFPSERFNALE-KLLHDSLSAQSSTADGTSKHLAEFEK 339


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 9   RLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKE-HALKIEQ 67
           R  L Q T   S  V Q  S+P +  ER++A +L+     +SA ++ +  K+   L I+ 
Sbjct: 510 RQELAQVTEINSCRVLQHRSNPTLKYERIKAAQLEMLNAENSALKALLEDKKVDCLPIQS 569

Query: 68  F 68
           F
Sbjct: 570 F 570


>SPBC119.04 |mei3||meiosis inducing protein Mei3
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 20 SNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTK--EHA 62
          SN+   +SS+  +P     A    SPR S  +S +N  TK  +HA
Sbjct: 7  SNSRHPASSASALPNRTNTARRSTSPRTSTGSSSTNTNTKTVDHA 51


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 5   RSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASES 54
           R + R   ++ T   S+ +D+S +S +  T   ++   K P + +S+SES
Sbjct: 107 RKRARSSKKKATDSVSDKIDESVASYDSSTHLRRSSRSKKPVNYNSSSES 156


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 35   ERLQALELKSPRDSHSASESNIPTKEHALKIEQFPN 70
            E+L+ L+++  R     SE     KE A+KIEQ  N
Sbjct: 1080 EKLEKLKVEVERRRRLLSEKEERRKELAIKIEQVTN 1115


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 20/78 (25%), Positives = 30/78 (38%)

Query: 24  DQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKT 83
           D   +S  I  ER     L  P  S +  E+++      L IE     NKS    A+   
Sbjct: 235 DSKDTSISIQVERYPRTRLTKPPTSSAFYENDMSKNYECLNIENSNVENKSMESDAVSTV 294

Query: 84  GTDTSGDMQANTLRDLKR 101
            +    D + N   ++KR
Sbjct: 295 RSYMVRDPKTNDSFEVKR 312


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 2   KPIRSK-HRLGLRQETSPKSNAVDQSSSSPEIPTERLQALE----LKSPRDSHSASESNI 56
           KP +SK  +LG +++   + N    +  + E P+++ Q LE    LKS     S  E  +
Sbjct: 34  KPQKSKLTKLGKQKQRQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSSKKEPVV 93

Query: 57  PTKEHALKIEQ 67
             K+   KI Q
Sbjct: 94  VPKKGTPKIFQ 104


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 14  QETSPKSNAVDQSSSSPEIPTERLQALE-LKSPRDSHSASESNIPTKEHALKIE-QFPNW 71
           Q  SP  + VDQ+S        R    +  K+PR S+ +  S+  +KEH      + P+ 
Sbjct: 16  QYRSPLKSNVDQNSFYESSYRSRQSYHQRTKTPRSSYDSPSSSTNSKEHNSPYHYRVPSN 75

Query: 72  NKSQIPVAIHKTGTDTSGDMQANTLRD 98
           N ++   +     TDT+ ++    L D
Sbjct: 76  NSTR--ASFGAASTDTNVELPKINLPD 100


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 14  QETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQFPNWNK 73
           + T+  S+    SSS+   PTE+  A +  SP++      S  P++    +    P+  +
Sbjct: 471 KSTTNDSSPPKDSSSTSTQPTEQSNAQQAPSPKEEERPLPSE-PSQNQPAEYRDTPDTPR 529

Query: 74  SQIPV 78
           + +P+
Sbjct: 530 NIMPL 534


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 986,153
Number of Sequences: 5004
Number of extensions: 38673
Number of successful extensions: 122
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 19
length of query: 225
length of database: 2,362,478
effective HSP length: 70
effective length of query: 155
effective length of database: 2,012,198
effective search space: 311890690
effective search space used: 311890690
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)