Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002054-TA|BGIBMGA002054-PA|undefined
(225 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 31 1.0
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609... 29 2.3
04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285 29 2.3
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 4.1
06_02_0092 - 11624905-11625123,11625206-11625292,11625767-116258... 28 5.4
04_03_0946 + 20975955-20976095,20976189-20976330,20976449-209765... 28 5.4
06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55... 28 7.1
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 27 9.4
01_01_0111 + 806850-806938,807213-807291,807533-807855,808291-80... 27 9.4
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 146 DRNELLLREMERFDRLTRSLQKIVGAEVAQQRRPRDENHEKVEGMPRSVVGGQS 199
+RN + +++ + +++L R Q+I+ + +EN+E+ G+ S G +S
Sbjct: 193 ERNTIKIKKRKEYEKLRRQCQQILNCYKGNGLKVINENNEECSGIEFSAEGSES 246
>07_01_1104 -
10160493-10160599,10160632-10160637,10160930-10160975,
10161053-10161190,10161275-10161679,10163193-10163330,
10163401-10163482,10163596-10163943,10164294-10164655,
10165154-10165209,10166428-10166558,10166564-10166628,
10169191-10169631
Length = 774
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 40 LELKSPRDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRDL 99
L+ ++ ++ +N T ++++ ++KS P A + T T S + A R
Sbjct: 421 LDQSYDENADTSKTTNANTSSSVWRVKKLLQFDKSHRP-AYYGTWTMKSSTVSA---RHP 476
Query: 100 KRCKPCKDHDVEGLQDWKPEVIGKN 124
+ P D+DV+ ++W+ E G+N
Sbjct: 477 FKVDPLLDYDVDSDEEWEEEEPGEN 501
>04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285
Length = 488
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 150 LLLREMERFDRLTRSLQKIVGAEVAQQRRPRDENHEKVEGMPRSVVGG-QSNVYTRLLRG 208
+LL R R+ R IV V R + +NH++ + P + GG SNV +RL +
Sbjct: 256 ILLPRALRSRRILRMDASIVRDVVVVDGRVKFKNHQQQQQQPDVINGGATSNVASRLRKV 315
Query: 209 ILW 211
+W
Sbjct: 316 SMW 318
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 28.7 bits (61), Expect = 4.1
Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 7/178 (3%)
Query: 37 LQALELKSPRDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTL 96
++ LELK H S + KE LK+++ ++S + G + + +
Sbjct: 817 IKELELKLKEQEHHRSVAESKIKELELKLKE-QEHHRSVAESKAMEIGQELLETQRTEAM 875
Query: 97 RDLK-RCKPCKDHDVEGLQDWKPEVIGKNAVRXXXXXXXXXXXXDVKE--LGDRNELLLR 153
+K R + LQD + N +R +E + ++ + +LR
Sbjct: 876 LQIKPRDLENNLQERTTLQDTNMILDSTNCMRVASTPGEAKAHLLTREEAMSEKEQHILR 935
Query: 154 EMERFDRLTRSLQKIVGAE--VAQQRRPRDENHEKVEG-MPRSVVGGQSNVYTRLLRG 208
+ ++ + IVGA V +++R D + + G + VG Q+ R L+G
Sbjct: 936 SSDSMNKKVTNNSSIVGAPEVVNEKKRKGDARNSSIGGELENQPVGSQNASRKRSLQG 993
>06_02_0092 -
11624905-11625123,11625206-11625292,11625767-11625889,
11625992-11626351,11626427-11626511,11626603-11626661,
11627173-11627265,11627360-11627464,11627539-11627636,
11627811-11627916,11628009-11628131,11628986-11629021,
11629113-11629310,11629415-11629612,11629917-11630056,
11630181-11630322,11630416-11630556
Length = 770
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 107 DHDVEGLQDWKPEVIGKNAVRXXXXXXXXXXXXDVKELGDRNELLLREMERFD 159
D + E QDW+ ++ D +E+ N+LLL E+F+
Sbjct: 91 DEEEEAGQDWQKGIVASCTESEGFHKVSMAVLDDFREMVSENDLLLLSKEKFE 143
>04_03_0946 +
20975955-20976095,20976189-20976330,20976449-20976588,
20976893-20977090,20977195-20977392,20977484-20977519,
20978374-20978496,20978589-20978694,20978869-20978966,
20979041-20979145,20979240-20979332,20979842-20979900,
20979984-20980068,20980144-20980503,20980606-20980728,
20981203-20981289,20981372-20981590
Length = 770
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 107 DHDVEGLQDWKPEVIGKNAVRXXXXXXXXXXXXDVKELGDRNELLLREMERFD 159
D + E QDW+ ++ D +E+ N+LLL E+F+
Sbjct: 91 DEEEEAGQDWQKGIVASCTESEGFHKVSMAVLDDFREMVSENDLLLLSKEKFE 143
>06_01_0065 +
549972-550770,551577-552190,552392-552544,552769-552885,
552972-553076,553269-553334,553430-553494,553577-553778,
554026-554169,554212-554340
Length = 797
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 82 KTGTDTSGDMQANTLRDLKRCKPCKDHDVEGLQDW 116
K D +G++ + D +R + C++HD DW
Sbjct: 416 KALVDKAGNLAMKRIIDRRRAQFCQEHDENSKHDW 450
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 13 RQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQFPNWN 72
+QE SP SN++ P +L++ +DS +S+ N P+ K N
Sbjct: 432 QQEMSPDSNSIVNGCHWPR--DMKLRSDTRSGIKDSVVSSQCNSPSTRSFRKKGTLQMEN 489
Query: 73 KSQIPVAIHKTGTDTSGDMQANTLRDLKRCKPCKDHDV 110
S A + DT+ + A D R + C D +
Sbjct: 490 NSSFVDAQSDSMEDTNNEHSATDGCDSSRKEECVDESI 527
>01_01_0111 +
806850-806938,807213-807291,807533-807855,
808291-808375,808468-808488,808704-808721
Length = 204
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 32 IPTERLQALELKSPRDSHSASESNIPTKEHALKI 65
+P ER Q L L+S S S +P KE +K+
Sbjct: 19 VPRERRQPLSLQSTLSDFHQSSSIVPEKEKHIKL 52
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.130 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,354,450
Number of Sequences: 37544
Number of extensions: 249468
Number of successful extensions: 541
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 10
length of query: 225
length of database: 14,793,348
effective HSP length: 79
effective length of query: 146
effective length of database: 11,827,372
effective search space: 1726796312
effective search space used: 1726796312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
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