GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002054-TA|BGIBMGA002054-PA|undefined
         (225 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.016
SB_23093| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)                  29   4.1  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)           29   4.1  
SB_15988| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     29   4.1  
SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)                  28   5.4  
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 28   5.4  
SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)                28   7.2  
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_46807| Best HMM Match : DUF827 (HMM E-Value=0.28)                   28   7.2  
SB_55887| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_32806| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_5683| Best HMM Match : SAND (HMM E-Value=0.073)                     27   9.5  

>SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1059

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 2   KPIRSKHRLGLRQETSPKS--NAVDQSSSSPE--IPTERLQALELKSPRDSHSASESNIP 57
           KPI ++  +G    TSP++   +V    +SPE  +  ER +   L   +   S  +    
Sbjct: 586 KPIPAEEEMGRGPNTSPRNAKRSVPAEQASPEQKVLQERQKQQRLLEEQKDFSLQDERWK 645

Query: 58  TKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRDLKRCKPCKDHDVEGLQDWK 117
             E  L             PV        +S  +QA+ + D+   KP  ++ V+ L DW 
Sbjct: 646 RMEQELDKAFSQTVPSLSSPVPQQDMSDQSSVGIQASLIEDVSPLKPLSNYYVKMLSDWG 705

Query: 118 PE 119
            E
Sbjct: 706 QE 707


>SB_23093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 159 DRLTRSLQKIVGAEVAQQRRPRDENHEKVE---GMPRSVVGGQSNVYTRLLRGILWELEV 215
           +R TR +++I   + ++     + N +K +   GM     GG     +R++R +  ELE+
Sbjct: 46  NRQTRVMEQITSTDSSRSLNKSENNLQKQQHEIGMETEATGGGERFLSRMMRPLANELEI 105

Query: 216 IGPRNGRNS 224
           I  RN R+S
Sbjct: 106 IRGRNPRDS 114


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 3    PIRSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTK 59
            P+ S+           +S    +SS+   +P E     E + P +SHS  ES  PT+
Sbjct: 1659 PLESRSPFESNSSFQSRSTTESRSSAESRLPAESRLPAESRLPYESHSPYESRYPTE 1715


>SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 8  HRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIP 57
          H+L +   TSP++N + +  +S E    RL++L + SP  + +A E  +P
Sbjct: 13 HKLRMPTRTSPRNNKLLERRTSSENTLHRLESLSILSP--ASAAVEDVVP 60


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 154 EMERFDRLTRSLQKIVGAEVAQQRRPRDENHEKVEGMPRSVVGGQSNVYTRLLRGIL 210
           ++E    L R+LQ +V  E+++   P  ++ +    +   V+G   +VY   L G+L
Sbjct: 675 QLEYLQTLNRTLQALVYEELSRTFAPASQDADHSSMLDAGVLGWMFDVYCAKLGGVL 731


>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 700

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 13/72 (18%)

Query: 8   HRLGLRQETSPKSNAVDQSSSSPEI--PTERLQALELKSPRDS--HSASES--------- 54
           H L L Q+  P ++   +S+S P++   TE+     L  P D   HS  ES         
Sbjct: 62  HSLSLPQQPDPATHDQQKSTSMPQVQTATEQTARCYLSKPGDKSFHSLQESFGSNTFEYV 121

Query: 55  NIPTKEHALKIE 66
           N+P  +H  K+E
Sbjct: 122 NLPKPDHEPKLE 133


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 16   TSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQF 68
            + P  + + + + SP +P E    L  K+P  SHS +  ++  K+  LK  +F
Sbjct: 6252 SKPTHDTMPKGTPSPTLPGEDYDVLPSKNPSCSHSKTYYHVTIKD-GLKAGEF 6303


>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
          Length = 472

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 13  RQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQFPNWN 72
           + + +    A D+++  PE   E ++ +E +     +S   +NI  K  + K E+  +  
Sbjct: 317 KDQNATNEKAKDKNTK-PESLQEIIKKVESEEKTVINSTETANIAAKNESKKEEKANDAP 375

Query: 73  KSQIPVAIHKTGTDTSGDMQANTLRDLKRCKPCKDHDVEGLQDWKPEVI 121
           +   P     T  D    +  N L+ L+  K         L+D  PE++
Sbjct: 376 RDSKPADSASTAADVIQAVAQNMLKALQPNKEKNTATPAKLEDTLPEIV 424


>SB_15988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 149 ELLLREMERFDRL--------TRSLQKIVGAEVAQQRRPRDENHEKVEGMPRSVVGGQSN 200
           EL L ++ER DRL         R L+   G + A +R PR E H      P S  G +  
Sbjct: 190 ELYLSKVEREDRLEQGIQSKNMRKLRSKAGDKAASKRHPRGEVHHPAR--PFSADGPRRA 247

Query: 201 VYTRLLRG 208
           ++   LRG
Sbjct: 248 IHKGALRG 255


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 14  QETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQFPNWNK 73
           ++ SP+ N   +  + P    +R   L  K+    H+ ++ N P      +     + N+
Sbjct: 909 EKLSPRDNKAKEKLNGPS--KQRQDTLGTKTSNYDHNTAKKNTPKATVLEESASLTSANR 966

Query: 74  SQIPVAIHKTGTDTSGD 90
             +PV+++ + T  + D
Sbjct: 967 RGLPVSLYSSNTGKTPD 983


>SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)
          Length = 1231

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/42 (23%), Positives = 26/42 (61%)

Query: 147  RNELLLREMERFDRLTRSLQKIVGAEVAQQRRPRDENHEKVE 188
            + E+L+RE++ +++  R+ +K+   ++  QR   +  H++ E
Sbjct: 1138 KGEVLIRELDGYNKKERAREKMRQKQLRLQREREEAEHQEAE 1179


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)

Query: 146 DRNELLLREMERFDRLTRSLQKIVGAEVAQQRRPRDE 182
           DR+ ++ ++    D+L  SL K +GA VAQ ++P+ +
Sbjct: 485 DRSSIIQKQK---DQLKDSLNKTLGAHVAQHQKPKSQ 518


>SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 30  PEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQFP 69
           PE+  + L ++    P  +++ +E N PT EHA+K E+ P
Sbjct: 424 PEVWYDALDSMPNDPPSRNYTKNEFN-PTPEHAMKRERQP 462


>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
          Length = 520

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 17  SPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQ 67
           SP S  +D+  SSP  P  ++  + L   R + S S  ++P  E   K+E+
Sbjct: 333 SPSSIMLDRPDSSPARPASQMSGVSLS--RSNSSPSLLDLPAIEMTEKVER 381


>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1399

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 3    PIRSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHA 62
            P+R     G+ +  +P+   +D+  S    P  R  + + K+  D HS+   +  +    
Sbjct: 1123 PVRGGAGAGISKRVNPQ-RTIDEEGSEESSPNLRFSSRDRKNTPDRHSSDRKSSYSDHKT 1181

Query: 63   LKIEQFPN 70
               E  P+
Sbjct: 1182 TPTEHVPS 1189


>SB_46807| Best HMM Match : DUF827 (HMM E-Value=0.28)
          Length = 558

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 143 ELGDRNELLLREMERFDRLTRSLQKIVGAEVAQQRRPRDENHEKVE 188
           +LG   +   REM R  R      ++  AE+A  R  RD+   ++E
Sbjct: 457 QLGQAADRTNREMTRLKRTVTDQSRMTMAELASMRSERDDGARQME 502


>SB_55887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 15  ETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKE 60
           ETS +   V Q SSS  I ++  Q LE ++ R +HS+  S   TK+
Sbjct: 300 ETSDRLQDVTQESSSSSIKSKSAQELETEN-RRAHSSWLSPSKTKD 344


>SB_32806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 45 PRDSHSASESNIPTKEHALKIEQFPN 70
          P DSH+  +  IP+  HA K +  P+
Sbjct: 26 PSDSHATRDDGIPSDSHATKDDGIPS 51


>SB_5683| Best HMM Match : SAND (HMM E-Value=0.073)
          Length = 311

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 44 SPRDSHSASESNIPTKEHALKIEQFPNWNKSQI 76
          S  +SH +S S  PT+ + L +  FP  N+ QI
Sbjct: 41 SATNSHESSGSCSPTENNNLILNNFPKQNRLQI 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,355,423
Number of Sequences: 59808
Number of extensions: 288559
Number of successful extensions: 989
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 35
length of query: 225
length of database: 16,821,457
effective HSP length: 80
effective length of query: 145
effective length of database: 12,036,817
effective search space: 1745338465
effective search space used: 1745338465
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)