Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002054-TA|BGIBMGA002054-PA|undefined
(225 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14680-1|AAA73985.1| 1863|Homo sapiens breast and ovarian cancer... 32 1.4
L78833-1|AAC37594.1| 1863|Homo sapiens BRCA1 protein. 32 1.4
DQ478408-3|ABF14462.1| 1822|Homo sapiens early onset breast canc... 32 1.4
DQ190457-3|ABA29229.1| 1822|Homo sapiens breast cancer 1 early o... 32 1.4
DQ190456-3|ABA29226.1| 1863|Homo sapiens breast cancer 1 early o... 32 1.4
DQ190455-3|ABA29223.1| 1863|Homo sapiens breast cancer 1 early o... 32 1.4
DQ190454-3|ABA29220.1| 1863|Homo sapiens breast cancer 1 early o... 32 1.4
DQ190453-3|ABA29217.1| 1863|Homo sapiens breast cancer 1 early o... 32 1.4
DQ190452-3|ABA29214.1| 1863|Homo sapiens breast cancer 1 early o... 32 1.4
DQ190451-3|ABA29211.1| 1863|Homo sapiens breast cancer 1 early o... 32 1.4
DQ190450-3|ABA29208.1| 1863|Homo sapiens breast cancer 1 early o... 32 1.4
BC085615-1|AAH85615.1| 624|Homo sapiens BRCA1 protein protein. 32 1.4
BC072418-1|AAH72418.1| 699|Homo sapiens BRCA1 protein protein. 32 1.4
AY273801-1|AAP12647.1| 1863|Homo sapiens breast cancer 1, early ... 32 1.4
AF005068-1|AAB61673.1| 1792|Homo sapiens breast and ovarian canc... 32 1.4
U64805-1|AAC00049.1| 759|Homo sapiens Brca1-delta11b protein. 31 2.5
BC115037-1|AAI15038.1| 1354|Homo sapiens BRCA1 protein protein. 31 2.5
AY751490-1|AAU93634.1| 1841|Homo sapiens breast and ovarian canc... 31 2.5
M73548-2|AAA60354.1| 2743|Homo sapiens polyposis locus-encoded p... 29 10.0
M73548-1|AAA60353.1| 2844|Homo sapiens polyposis locus-encoded p... 29 10.0
>U14680-1|AAA73985.1| 1863|Homo sapiens breast and ovarian cancer
susceptibility protein.
Length = 1863
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>L78833-1|AAC37594.1| 1863|Homo sapiens BRCA1 protein.
Length = 1863
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>DQ478408-3|ABF14462.1| 1822|Homo sapiens early onset breast cancer 1
protein.
Length = 1822
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>DQ190457-3|ABA29229.1| 1822|Homo sapiens breast cancer 1 early onset
protein.
Length = 1822
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>DQ190456-3|ABA29226.1| 1863|Homo sapiens breast cancer 1 early onset
protein.
Length = 1863
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>DQ190455-3|ABA29223.1| 1863|Homo sapiens breast cancer 1 early onset
protein.
Length = 1863
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>DQ190454-3|ABA29220.1| 1863|Homo sapiens breast cancer 1 early onset
protein.
Length = 1863
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>DQ190453-3|ABA29217.1| 1863|Homo sapiens breast cancer 1 early onset
protein.
Length = 1863
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>DQ190452-3|ABA29214.1| 1863|Homo sapiens breast cancer 1 early onset
protein.
Length = 1863
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>DQ190451-3|ABA29211.1| 1863|Homo sapiens breast cancer 1 early onset
protein.
Length = 1863
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>DQ190450-3|ABA29208.1| 1863|Homo sapiens breast cancer 1 early onset
protein.
Length = 1863
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>BC085615-1|AAH85615.1| 624|Homo sapiens BRCA1 protein protein.
Length = 624
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 479 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 531
>BC072418-1|AAH72418.1| 699|Homo sapiens BRCA1 protein protein.
Length = 699
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 479 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 531
>AY273801-1|AAP12647.1| 1863|Homo sapiens breast cancer 1, early onset
protein.
Length = 1863
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1635
>AF005068-1|AAB61673.1| 1792|Homo sapiens breast and ovarian cancer
susceptibility protein splice variant protein.
Length = 1792
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1512 RAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTTDTAGYNAMEESVSRE 1564
>U64805-1|AAC00049.1| 759|Homo sapiens Brca1-delta11b protein.
Length = 759
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 479 RAPESARVGNIPSSTSALKVPQLKVAESAQGPAAAHTTDTAGYNAMEESVSRE 531
>BC115037-1|AAI15038.1| 1354|Homo sapiens BRCA1 protein protein.
Length = 1354
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1074 RAPESARVGNIPSSTSALKVPQLKVAESAQGPAAAHTTDTAGYNAMEESVSRE 1126
>AY751490-1|AAU93634.1| 1841|Homo sapiens breast and ovarian cancer
susceptibility protein protein.
Length = 1841
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 46 RDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAIHKTGTDTSGDMQANTLRD 98
R SA NIP+ ALK+ Q +Q P A H T T M+ + R+
Sbjct: 1583 RAPESARVGNIPSSTSALKVPQLKVAESAQGPAAAHTTDTAGYNAMEESVSRE 1635
>M73548-2|AAA60354.1| 2743|Homo sapiens polyposis locus-encoded
protein protein.
Length = 2743
Score = 29.5 bits (63), Expect = 10.0
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 7 KHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASE----SNIPTKEHA 62
K ++G R P S S+ E + RLQ L S H A E + P+K A
Sbjct: 1207 KGKIGTRSAEDPVSEVPSSVHSTLETKSSRLQGSSLSSESARHKAVEFPSGAKSPSKSGA 1266
Query: 63 LKIEQFPNWNKSQIPVAIHK-TGTDTSGDMQANTLRDLKRCKPC 105
+ P + P+ + T + ++ ++ + +PC
Sbjct: 1267 QTPKSPPEHYVQETPLMFSRCTSVSSLDSFESRSIASSVQSEPC 1310
>M73548-1|AAA60353.1| 2844|Homo sapiens polyposis locus-encoded
protein protein.
Length = 2844
Score = 29.5 bits (63), Expect = 10.0
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 7 KHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASE----SNIPTKEHA 62
K ++G R P S S+ E + RLQ L S H A E + P+K A
Sbjct: 1308 KGKIGTRSAEDPVSEVPSSVHSTLETKSSRLQGSSLSSESARHKAVEFPSGAKSPSKSGA 1367
Query: 63 LKIEQFPNWNKSQIPVAIHK-TGTDTSGDMQANTLRDLKRCKPC 105
+ P + P+ + T + ++ ++ + +PC
Sbjct: 1368 QTPKSPPEHYVQETPLMFSRCTSVSSLDSFESRSIASSVQSEPC 1411
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.312 0.130 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,399,008
Number of Sequences: 224733
Number of extensions: 1157246
Number of successful extensions: 2759
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2741
Number of HSP's gapped (non-prelim): 20
length of query: 225
length of database: 73,234,838
effective HSP length: 87
effective length of query: 138
effective length of database: 53,683,067
effective search space: 7408263246
effective search space used: 7408263246
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
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