GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002054-TA|BGIBMGA002054-PA|undefined
         (225 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81562-8|CAB04562.1| 1304|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81474-9|CAB03907.1| 1304|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U41018-2|AAA82325.2|  260|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   6.2  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   6.2  
AC006695-12|AAF39983.2|  327|Caenorhabditis elegans Hypothetical...    28   6.2  
U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    27   8.3  

>Z81562-8|CAB04562.1| 1304|Caenorhabditis elegans Hypothetical protein
            C18D4.1 protein.
          Length = 1304

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/62 (29%), Positives = 27/62 (43%)

Query: 6    SKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKI 65
            +K +LG+ Q  S        + +SPE            + R+    SESNI  K + L I
Sbjct: 941  AKLKLGITQSLSDSKEDPSTNEASPEDDLPSTSDNRTPTSRERSERSESNIDNKMNKLTI 1000

Query: 66   EQ 67
            +Q
Sbjct: 1001 KQ 1002


>Z81474-9|CAB03907.1| 1304|Caenorhabditis elegans Hypothetical protein
            C18D4.1 protein.
          Length = 1304

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/62 (29%), Positives = 27/62 (43%)

Query: 6    SKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKI 65
            +K +LG+ Q  S        + +SPE            + R+    SESNI  K + L I
Sbjct: 941  AKLKLGITQSLSDSKEDPSTNEASPEDDLPSTSDNRTPTSRERSERSESNIDNKMNKLTI 1000

Query: 66   EQ 67
            +Q
Sbjct: 1001 KQ 1002


>Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical
           protein K01C8.5 protein.
          Length = 707

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 14  QETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQFPNWNK 73
           + TS + + V +SS SP +  +R  +   K     HS  +   P+ ++    +   NW K
Sbjct: 318 KSTSSRHSNVSRSSKSPYLNDDRAPSRGSKCTSSHHSTPKLLTPSPQYLKDSDDDDNW-K 376

Query: 74  SQIP 77
           + IP
Sbjct: 377 NSIP 380


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 18  PKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTK----EHALKIEQFPNWNK 73
           PKS  V      P+ P+E ++ ++ +  + +   SE+ +  K    + A+  E  P+W  
Sbjct: 460 PKSGVVAPRKIIPKKPSENVEKVDKRFQKGTQKKSEAVVEKKKGSSKSAVSGEMHPSWIA 519

Query: 74  SQI 76
           SQ+
Sbjct: 520 SQL 522


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 18  PKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTK----EHALKIEQFPNWNK 73
           PKS  V      P+ P+E ++ ++ +  + +   SE+ +  K    + A+  E  P+W  
Sbjct: 460 PKSGVVAPRKIIPKKPSENVEKVDKRFQKGTQKKSEAVVEKKKGSSKSAVSGEMHPSWIA 519

Query: 74  SQI 76
           SQ+
Sbjct: 520 SQL 522


>U41018-2|AAA82325.2|  260|Caenorhabditis elegans Hypothetical
           protein ZK816.4 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 151 LLREMERFDR-LTRSLQKIVGAEVAQQRRPRDENHEKVEGMPRSVVGGQSNVY 202
           +LR +E F + LTRS      AE+    R   E+H +V+G   + V G    Y
Sbjct: 149 MLRNIECFTKTLTRSEMMQCQAELVSDTRKISESHSEVKGANDAAVCGAMRNY 201


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query: 146   DRNELLLREMERFDRLTRSLQKIVGAEVAQQRRPRDENHEKVEGMPRSVVGGQS 199
             ++ + +  E +  + L  S +K V      +++P D+N  +V G+P    G ++
Sbjct: 12800 EKKDEVTAEKQSTEALIESKKKEVDESKISEQQPSDKNKSEVVGVPEKAAGPET 12853


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query: 146   DRNELLLREMERFDRLTRSLQKIVGAEVAQQRRPRDENHEKVEGMPRSVVGGQS 199
             ++ + +  E +  + L  S +K V      +++P D+N  +V G+P    G ++
Sbjct: 12800 EKKDEVTAEKQSTEALIESKKKEVDESKISEQQPSDKNKSEVVGVPEKAAGPET 12853


>AC006695-12|AAF39983.2|  327|Caenorhabditis elegans Hypothetical
           protein W06H8.6 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 26  SSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHAL 63
           S SS E  TER Q  +L +   S    E+N+P ++H L
Sbjct: 84  SRSSAERETERAQRRQLLNTSLSKLREEANMPLRKHLL 121


>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 166 QKIVGAEVAQQRRPRDENHEKVEGMPRSVVGGQSNVYTRLLR 207
           Q+ +G +   + + R +  +++ GM +SV G +  V  RLL+
Sbjct: 60  QQYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQ 101


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,305,031
Number of Sequences: 27539
Number of extensions: 210027
Number of successful extensions: 593
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 16
length of query: 225
length of database: 12,573,161
effective HSP length: 79
effective length of query: 146
effective length of database: 10,397,580
effective search space: 1518046680
effective search space used: 1518046680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)