GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002054-TA|BGIBMGA002054-PA|undefined
         (225 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.76 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 25  QSSSSPEIPTERLQAL-ELKSPRDSHSASESNIPTKEHA-LKIEQFPNWNKSQIPVAIHK 82
           +S S  E+  ++LQ + + K    S S +++ +P  + A +  EQ PN  K   P    K
Sbjct: 737 RSESEFEMYHQQLQGVAKNKKNVGSMSRNKALLPVIKPANVNKEQSPNSTKETTPKKERK 796

Query: 83  TGTDTSGDMQANTLRDLKRCKPCKDHDV 110
           T T T   + +   +     K   DH V
Sbjct: 797 TATTTQPVISSRKEQKKSEEKNINDHCV 824


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 31  EIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQFPNWNK 73
           E+P   L+  E  S  D  S  +S+   K +  KI +   W K
Sbjct: 179 EVPQINLEWGEGSSGDDLSSEWDSDYTDKSNEKKIPKSSGWRK 221


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 111 EGLQDWKPEVIGKNA 125
           +GL +WKP  I K++
Sbjct: 138 QGLVEWKPPAIYKSS 152


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,461
Number of Sequences: 429
Number of extensions: 2683
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 225
length of database: 140,377
effective HSP length: 55
effective length of query: 170
effective length of database: 116,782
effective search space: 19852940
effective search space used: 19852940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)