Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002054-TA|BGIBMGA002054-PA|undefined
(225 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1) ide... 31 0.48
At1g30470.1 68414.m03724 SIT4 phosphatase-associated family prot... 31 0.48
At3g26370.1 68416.m03289 expressed protein contains Pfam PF03138... 31 0.83
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 29 3.4
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 28 4.4
At3g03770.1 68416.m00383 leucine-rich repeat transmembrane prote... 28 4.4
At1g79700.1 68414.m09295 ovule development protein, putative sim... 28 5.9
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 28 5.9
At1g64770.1 68414.m07344 expressed protein 28 5.9
At1g24270.1 68414.m03063 hypothetical protein 28 5.9
At5g10160.1 68418.m01176 beta-hydroxyacyl-ACP dehydratase, putat... 27 7.8
>At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1)
identical to SP|Q9SB81 Peroxidase 42 precursor (EC
1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b)
{Arabidopsis thaliana}
Length = 330
Score = 31.5 bits (68), Expect = 0.48
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 3 PIRSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPR-----DSHSASESNIP 57
P+++ R GL+ T + + + S + E+ +++ + +P SHS ++
Sbjct: 146 PLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCV 205
Query: 58 TKEHALKIEQFPNWNKSQIPVAIHK 82
H L E P+ N +P +HK
Sbjct: 206 KLVHRLYPEVDPSLNPDHVPHMLHK 230
>At1g30470.1 68414.m03724 SIT4 phosphatase-associated family protein
contains similarity to copper chaperone homolog CCH
GB:AAF15286 GI:6525011 from [Glycine max]; contains Pfam
profile PF04499: SIT4 phosphatase-associated protein
Length = 811
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 15 ETSPKSNAVDQSSSSPEIP-TERLQALELKSPRDSHSASESNIPTKEHALK 64
E SPK++ ++ + SSP+ E L P +SH+ ++S+ P H K
Sbjct: 737 ENSPKASGIEPTESSPKASGAEVTGNLRDSDPAESHADAKSSEPESPHGTK 787
>At3g26370.1 68416.m03289 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 557
Score = 30.7 bits (66), Expect = 0.83
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 1 MKPIRSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKE 60
M +R LG R +SP A D+ SSSP + + + R H + + + P
Sbjct: 1 MAELRHSSSLGSRSSSSPLRAAGDEDSSSPHVHDHSPNGGDDEDGRPRHPSRDRDRPIWF 60
Query: 61 HAL 63
H+L
Sbjct: 61 HSL 63
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 28.7 bits (61), Expect = 3.4
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 30 PEIPTERLQALELKSPRDSHSASESNIPTKEHALKIEQFPNWNKSQIPVAI--HKTGTDT 87
PE PT+ + + LK PR S S TK + + W S A+ K G ++
Sbjct: 490 PESPTDEAKCMLLKPPRVQRSPS-----TKYNEAR------WATSTDSGALDSKKNGLES 538
Query: 88 SGDMQANT-LRDLKRCKPCKDHDVE 111
S DM T LRD + PC++ D+E
Sbjct: 539 SRDMDLPTGLRDDRGSNPCEE-DIE 562
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 3 PIRSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHA 62
P+ K + ++ +S++ ++ SSS + PT + +K+ + + S S+ +
Sbjct: 248 PVVKKKPTTVVKDAKAESSSSEEESSSDDEPTPAKKPTVVKNAKPAAKDSSSSEEDSDEE 307
Query: 63 LKIEQFPNWNKSQIPVAIHK---TGTDTSGDMQANTLRDLKRCKPCKDHDVE 111
++ P K+++ K + ++S + +D K KD DVE
Sbjct: 308 ESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEESKDEKVTPKKKDSDVE 359
>At3g03770.1 68416.m00383 leucine-rich repeat transmembrane protein
kinase, putative may contain C-terminal ser/thr protein
kinase domain, similar to serine/threonine protein
kinase Pto GB:AAB47421 [Lycopersicon esculentum]
Length = 802
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 11 GLRQETSPKSNAVDQSSSSPEIPT-ERLQALELKSPRDS 48
G Q ++P SN S ++ +P RL L+SPRDS
Sbjct: 757 GWLQNSNPSSNLGSPSPAASSLPPPSRLHVTTLESPRDS 795
>At1g79700.1 68414.m09295 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099) [Arabidopsis thaliana]
Length = 303
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 2 KPIRSKHRLGLRQET--SPKSNAVDQSSSSPE-IPTER 36
KPIRS R + SPKS V + S+SPE IPT R
Sbjct: 221 KPIRSPSREPESSDDNKSPKSEEVIEPSTSPEVIPTRR 258
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 2 KPIRSKHRLGLRQETSPKSNAVDQSSSS----PEIPTERLQALELKSPRDSHSASES 54
K I+S H++ L +E ++ VD+ SSS E E + LK SHS S
Sbjct: 37 KHIQSHHQMELEEERDDEACEVDEESSSNHTCQECGAEFKKPAHLKQHMQSHSLERS 93
>At1g64770.1 68414.m07344 expressed protein
Length = 348
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 18 PKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASES-NIPTKE 60
PK AV S S+P+ T + LE K R SES NIP E
Sbjct: 11 PKPKAVRSSISAPQTQTINTEKLEDKFGRKGIKFSESNNIPMVE 54
>At1g24270.1 68414.m03063 hypothetical protein
Length = 199
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 26 SSSSPEIPTERLQALELKSPRDSHSASESNIPTKEHALKIE 66
SSS+ E+ + ++A E RD SAS ++ K+ A KIE
Sbjct: 143 SSSNRELINQIIEAFEDHLTRDEISASHTSKKNKKRAKKIE 183
>At5g10160.1 68418.m01176 beta-hydroxyacyl-ACP dehydratase,
putative similar to beta-hydroxyacyl-ACP dehydratase
from Toxoplasma gondii [GI:3850997]; contains Pfam
profile PF01377 Thioester dehydratase
Length = 219
Score = 27.5 bits (58), Expect = 7.8
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 1 MKPIRSKHRLGLRQETSPKSNAVDQSSSSPEIPTERLQALELKSPRDSHSASESNIPTKE 60
+ P R+ + L Q SP + +SSS P R +L L S +S S +E IP +
Sbjct: 10 VSPSRNLAAIPLHQSLSPP---LLRSSSVAFRPKRRSSSLVLCSTDESKSTAEKEIPIE- 65
Query: 61 HALKIEQFP 69
L+ E FP
Sbjct: 66 --LRYEAFP 72
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.130 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,229,504
Number of Sequences: 28952
Number of extensions: 209428
Number of successful extensions: 499
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 13
length of query: 225
length of database: 12,070,560
effective HSP length: 79
effective length of query: 146
effective length of database: 9,783,352
effective search space: 1428369392
effective search space used: 1428369392
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
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