Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002053-TA|BGIBMGA002053-PA|IPR004853|Protein of unknown
function DUF250
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 57 3e-09
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 30 0.52
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 26 8.5
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 26 8.5
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|... 26 8.5
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 8.5
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 26 8.5
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 57.2 bits (132), Expect = 3e-09
Identities = 62/312 (19%), Positives = 132/312 (42%), Gaps = 13/312 (4%)
Query: 22 ILSALFYAIASFMITVVNKTVLTTYAFPSYQVLGLGQMVATIMVLWFGRSAKLVQYPPLD 81
IL + Y +AS ++T+ NK VL++ + +L Q + + + K++ Y D
Sbjct: 14 ILPVVSYCMASILMTLTNKYVLSSPGYNMNFLLLTVQSTVCVAAIGILKRLKVINYRDFD 73
Query: 82 SGIARRIWPLPLIYLGNMATGLGGTKELSLPMFTALRRFSILMTMILERMVLG--VRA-- 137
A+ +P+ + + + T + LS+P++T + +I++ E + G V A
Sbjct: 74 FREAKFWFPISFLLVAMIYTASKALQFLSVPVYTIFKNLTIIIIAYGEVLWFGGHVTALT 133
Query: 138 --SWPVQXXXXXXXXXXXXXXXXXXTFSV-TGYTLVLLNDAFTAANGVYMKKKLDAKDLG 194
S+ + + ++ +GY ++LN AA + M+K++ +
Sbjct: 134 LFSFGLMVLSSIVAAWADIQSSSFASQTLNSGYLWMVLNCLTNAAFVLAMRKRIKLTNFR 193
Query: 195 KYGLMYYNALFMFVPAALVAWRTGD--LERSAE-YPHWNDPLFLSQFLMSCIMGFVLSYS 251
+ M+YN L + T D E A+ +P L +S + +SY+
Sbjct: 194 DFDTMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKFGVLMAMAISGVSSVGISYT 253
Query: 252 VMLCTQYNSALTTTIIGCLKNILVTYLGMVIGGDYVFSWLNFVGLNISVFASLLYTYVTF 311
C + S+ T +++G L + + G+V D ++ + + + + ++Y
Sbjct: 254 SAWCVRVTSSTTYSMVGALNKLPLAIAGLVF-FDAPITFGSVTAILLGFISGVVYAVAKS 312
Query: 312 --KRKPSPAYVL 321
+R+ PA +L
Sbjct: 313 QQQRQKDPATIL 324
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 29.9 bits (64), Expect = 0.52
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 10/156 (6%)
Query: 164 VTGYTLVLLNDAFTAANGVYMKKKLDAKDLGKYGLMYYNALFMFVPAALVAWRTGDLERS 223
VTG++ VL+ + GVY +K L + + + F P L D
Sbjct: 184 VTGFSAVLVACLISGLAGVYFEKVLKDTNPSLWVRNVQLSFFSLFPC-LFTILMKDYHNI 242
Query: 224 AE---YPHWNDPLFLSQFLMSCIMGFVLSYSVMLCTQYNSALTTTIIGCLKNILVTYLGM 280
AE + +N ++L+ L+ G +++ V +T+I +I+++ L
Sbjct: 243 AENGFFFGYNSIVWLA-ILLQAGGGIIVALCVAFADNIMKNFSTSI-----SIIISSLAS 296
Query: 281 VIGGDYVFSWLNFVGLNISVFASLLYTYVTFKRKPS 316
V D+ S +G+ + + A+ LYT K PS
Sbjct: 297 VYLMDFKISLTFLIGVMLVIAATFLYTKPESKPSPS 332
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 286 YVFSWLNFVGLNISVFASLLYTYVTFKRKPSPAYVLVNNGKVD 328
Y+FS+LNF L+++ +L P + N+ KVD
Sbjct: 146 YIFSFLNFENLSMTFVEALSMGATLSATDPVTVLAIFNSYKVD 188
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 74 LVQYPPLDSGIARRIWPLPLIYLGNMATGLG 104
L +YP L SG + + L LI+ GN+ TG G
Sbjct: 131 LEKYPELVSGGKKPLKGLKLIFDGNVPTGGG 161
>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 290
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 22 ILSALFYAIASFMITVVNKTVLTTYA 47
+LSALFY I + + V+++ + T YA
Sbjct: 44 LLSALFYQIINILSPVISRHLSTHYA 69
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 226 YPHWNDPLFLSQFLMSC---IMGFVLSYSVMLCTQYNSALTTTII 267
YP W FL+ L S I+G +SY++ C + S +II
Sbjct: 309 YPRWQQAFFLTNTLRSAVVVIVGTAISYAI--CKHHRSDPPISII 351
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 162 FSVTGYTLVLLNDAFTAANGVY-MKKKLDAKDL--GKYGLMYYNAL-FMFVPAALVAWRT 217
+S + + V L+DA++ + + KK D+ +L GK G ++ N + FM + +
Sbjct: 263 YSTSEFNFVTLSDAYSTGSSIMPQKKNPDSLELLRGKSGRVFGNMMGFMVSVKGIPSTYN 322
Query: 218 GDLERSAE 225
DL+ E
Sbjct: 323 KDLQEDKE 330
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.326 0.138 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,305,650
Number of Sequences: 5004
Number of extensions: 48710
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 7
length of query: 330
length of database: 2,362,478
effective HSP length: 73
effective length of query: 257
effective length of database: 1,997,186
effective search space: 513276802
effective search space used: 513276802
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)
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