GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002053-TA|BGIBMGA002053-PA|IPR004853|Protein of unknown
function DUF250
         (330 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33313| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   1e-14
SB_17764| Best HMM Match : Oleosin (HMM E-Value=1.3)                   62   8e-10
SB_49408| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)                 41   0.001
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.43 
SB_24685| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-06)                 31   0.99 
SB_10823| Best HMM Match : 7tm_1 (HMM E-Value=6e-22)                   31   0.99 
SB_30380| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_55499| Best HMM Match : Arm (HMM E-Value=0.15)                      30   3.0  
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_19323| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_33313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 31/71 (43%), Positives = 51/71 (71%)

Query: 14 DRAQMVKKILSALFYAIASFMITVVNKTVLTTYAFPSYQVLGLGQMVATIMVLWFGRSAK 73
          +R  + +++ +ALFY + SF+I VVNK VLT+Y FPS+Q +G+GQM AT++VL+  ++  
Sbjct: 6  ERVSLARRLCTALFYGLCSFLIVVVNKRVLTSYKFPSFQFIGIGQMTATVVVLYCAKAFG 65

Query: 74 LVQYPPLDSGI 84
           +++P    GI
Sbjct: 66 FIKFPDFHRGI 76


>SB_17764| Best HMM Match : Oleosin (HMM E-Value=1.3)
          Length = 134

 Score = 61.7 bits (143), Expect = 8e-10
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 226 YPHWNDPLFLSQFLMSCIMGFVLSYSVMLCTQYNSALTTTIIGCLKNILVTYLGMVIGGD 285
           Y  + +  F    ++  +MG VL+YS+ LC   NSALTT+++G +K +L T++G    G 
Sbjct: 6   YTQYKNNGFEVMIVIDVLMGCVLNYSLFLCATANSALTTSLVGVVKGVLTTFIGFFTFGG 65

Query: 286 YVFSWLNFVGLNISVFASLLYTYVTFKRK 314
              ++L   G+ ++    +LY+Y  +  K
Sbjct: 66  VPATFLTVSGVVLNTLGGVLYSYGKYMEK 94


>SB_49408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 192 DLGKYGLMYYNALFMFVPAALVAWRTGDLER 222
           DL KYGLM+YNA+FM  PA L+A+ T DL +
Sbjct: 1   DLNKYGLMFYNAVFMLGPAVLIAYYTNDLHK 31


>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
          Length = 680

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 163 SVTGYTLVLLNDAFTAANGVYMKKKLDAKDLGKYGLMYY---NALFMFVPAALVAWRTGD 219
           S +G    +L     + N +Y KK + A D   + L  Y   NA F+F+P  L+A   G+
Sbjct: 507 SYSGVLFGVLASLCVSLNAIYTKKFIPAVDNNIWRLQLYNNFNACFLFLP--LMA-LLGE 563

Query: 220 LERSAEYPHWNDPLFLSQFLMSCIMGFVLSYSVMLCTQYNSALTTTIIGCLKNILVTYLG 279
           +   A +P+ +   F     +  + G  + Y   L  +  S LT  I G  K  + T + 
Sbjct: 564 IGEVAHFPNLSSAYFWLMMTIGGVFGIAIGYITGLQIKVTSPLTHNISGTAKACVQTIMS 623

Query: 280 M 280
           +
Sbjct: 624 V 624


>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1002

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 239 LMSCIMGFVLSYSVMLCTQYNSALTT 264
           ++  +MG VL+YS+ LC   NSALTT
Sbjct: 4   VIDVLMGCVLNYSLFLCATANSALTT 29


>SB_24685| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-06)
          Length = 311

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 226 YPHWNDPLFL--SQFLMSCIMGFVLSY-SVMLCTQYNSALTTTIIGCLKNILVTYLGMVI 282
           +PHWN PLFL    F +  I+  + SY ++    +  S  T +++  ++  L   L +VI
Sbjct: 73  FPHWNYPLFLVIVSFFIPLII-ILFSYGTIYKVVRMRSKWTGSVL--IEIHLARTLAIVI 129

Query: 283 GGDYVFSWLNFVGLNISV 300
           G  ++  W  F  LN+ V
Sbjct: 130 GA-FILCWGPFFVLNVVV 146


>SB_10823| Best HMM Match : 7tm_1 (HMM E-Value=6e-22)
          Length = 451

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 226 YPHWNDPLFL--SQFLMSCIMGFVLSY-SVMLCTQYNSALTTTIIGCLKNILVTYLGMVI 282
           +PHWN PLFL    F +  I+  + SY ++    +  S  T +++  ++  L   L +VI
Sbjct: 242 FPHWNYPLFLVIVSFFIPLII-ILFSYGTIYKVVRMRSKWTGSVL--IEIHLARTLAIVI 298

Query: 283 GGDYVFSWLNFVGLNISV 300
           G  ++  W  F  LN+ V
Sbjct: 299 GA-FILCWGPFFVLNVVV 315


>SB_30380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 266 IIGCLKNILVTYLGMVIGGDYVFSWLNFVGLNISVFASLLYTYVTFKRK 314
           ++G +K +L T++G    G    ++L   G+ ++    +LY+Y  +  K
Sbjct: 2   LVGVVKGVLTTFIGFFTFGGVPATFLTVSGVVLNTLGGVLYSYGKYMEK 50


>SB_55499| Best HMM Match : Arm (HMM E-Value=0.15)
          Length = 586

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 232 PLFLSQFLMSCIMGFVLSYSVMLCTQYNSALTTTIIGCLKNILVTYLGMVIGGDYVFSWL 291
           PL L+   ++ ++G  + Y   + T  N+ L +T++      + T L  ++G   ++   
Sbjct: 238 PLLLALLQLNTLLGSSMLYFGAVFTGLNTLLDSTML--YFGAVFTGLNTLLGSSMLYFGA 295

Query: 292 NFVGLNISVFASLLYTYVTF 311
            F GLN  + +++LY    F
Sbjct: 296 VFTGLNTLLDSTMLYFGAVF 315


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 42  VLTTYAFPSYQVLGLGQMVATIMVLWFGRSAKLVQY 77
           V+T  A   Y++  L + V T  +LW  R  K V Y
Sbjct: 788 VITGVATQGYEIPVLSKWVLTYQLLWANREGKFVPY 823


>SB_19323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 197 GLMYYNALFMFVPAALVA-W-RTGDLERSAEYPHWNDPLFLSQFLMSCIMGFVLSYSVML 254
           G ++   +F+F+P   ++ W   GD +    +PH    +F++  L  C M F+     +L
Sbjct: 22  GALFLICMFLFIPLPFLSIWLEKGDFD----FPHHEFVMFIAALLSICCMIFLGFADDVL 77

Query: 255 CTQYNSALTTTIIGCLKNILVTYLGMVIGGDYVFSWLNFV-GLNISVFASLLYTYV 309
             ++   L    +  L  ++V ++ + +    V   + F+ G ++ +   L Y Y+
Sbjct: 78  DLKWRDKLILPTMASLPLLMVYFVNIGVTTIIVPKPVRFIFGFDLDL-GILYYVYM 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.138    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,985,629
Number of Sequences: 59808
Number of extensions: 320003
Number of successful extensions: 740
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 18
length of query: 330
length of database: 16,821,457
effective HSP length: 82
effective length of query: 248
effective length of database: 11,917,201
effective search space: 2955465848
effective search space used: 2955465848
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)