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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002053-TA|BGIBMGA002053-PA|IPR004853|Protein of unknown
function DUF250
         (330 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva ...   332   2e-91
Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical p...    41   0.001
AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like p...    41   0.001
Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical p...    40   0.002
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    32   0.65 
AF040642-9|AAB94950.1|  589|Caenorhabditis elegans Hypothetical ...    31   0.85 
Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical pr...    29   3.4  
X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein ...    29   3.4  
AF016441-6|AAX55687.1|  440|Caenorhabditis elegans Paps (adenosi...    29   3.4  
AF016441-4|AAX55686.1|  425|Caenorhabditis elegans Paps (adenosi...    29   3.4  
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z82284-4|CAB05288.1|  258|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf (diva...    29   6.0  
U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf (diva...    29   6.0  
AF016441-5|AAX55688.1|  408|Caenorhabditis elegans Paps (adenosi...    29   6.0  
U40800-10|AAA81495.2|  186|Caenorhabditis elegans Hypothetical p...    28   8.0  
AL023847-6|CAA19552.1|  297|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva
           protein 7 protein.
          Length = 329

 Score =  332 bits (817), Expect = 2e-91
 Identities = 158/303 (52%), Positives = 214/303 (70%), Gaps = 4/303 (1%)

Query: 15  RAQMVKKILSALFYAIASFMITVVNKTVLTTYAFPSYQVLGLGQMVATIMVLWFGRSAKL 74
           ++ +  ++ SA+FY + S +I  VNK +LT Y FPS+  +G+GQM+ATI++L+F +  ++
Sbjct: 6   QSPLYSRVFSAVFYGVISVLIVFVNKILLTNYKFPSFLFVGVGQMMATILILFFAKMFRI 65

Query: 75  VQYPPLDSGIARRIWPLPLIYLGNMATGLGGTKELSLPMFTALRRFSILMTMILERMVLG 134
           VQ+P LDS I R+I PLPL+Y  N+ +GLGGT+ ++LPMFT LRRFSILMTMILE  +L 
Sbjct: 66  VQFPSLDSSIPRKIMPLPLLYFFNLISGLGGTQMINLPMFTVLRRFSILMTMILEFYILN 125

Query: 135 VRASWPVQXXXXXXXXXXXXXXXXXXTFSVTGYTLVLLNDAFTAANGVYMKKKLDAKDLG 194
           V+AS  V+                  +F   GYT++ +N+  TAA GVY K+KLDAKDLG
Sbjct: 126 VKASKAVKISVGLMIGGSFIAAIYDLSFDALGYTMIFINNICTAALGVYTKQKLDAKDLG 185

Query: 195 KYGLMYYNALFMFVPAALVAWRTGDLERSAEYPHWNDPLFLSQ---FLMSCIMGFVLSYS 251
           KYGLM+YN LFM +PA  V   TGDL+R+  +   +D +  S    FL+SCI GFVL+YS
Sbjct: 186 KYGLMFYNCLFMLLPALCVVQYTGDLDRAYSF-MLSDSMTSSVWTCFLLSCICGFVLNYS 244

Query: 252 VMLCTQYNSALTTTIIGCLKNILVTYLGMVIGGDYVFSWLNFVGLNISVFASLLYTYVTF 311
           ++LCT +NSALTTT +G +KN+ VTY+GM   GDYVF W NF G+N+SVF S+LYTYVTF
Sbjct: 245 LVLCTHHNSALTTTCVGPIKNLFVTYVGMFSSGDYVFQWANFTGINVSVFGSILYTYVTF 304

Query: 312 KRK 314
           + K
Sbjct: 305 RSK 307


>Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical
           protein JC8.12a protein.
          Length = 315

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 52/260 (20%), Positives = 110/260 (42%), Gaps = 10/260 (3%)

Query: 24  SALFYAIASFMITVVNKTVLTTYAFPSYQVLGLGQMVATIMVLWFGRSAKLVQYPPLDSG 83
           S + +  AS   ++++K ++T Y F    V+ + Q  AT+ V+   R   +++  P    
Sbjct: 11  SMIVFVAASVFCSLMSKIMVTRYFFDYPVVILMMQSAATLFVIEVTRVLGILKVAPYCFE 70

Query: 84  IARRIWPLPLIYLGNMATGLGGTKELSLPMFTALRRFSILMTMILERMVLGVRASWPVQ- 142
             R I    ++Y  +    +   + +++P F +++R + +  +IL  +    R     Q 
Sbjct: 71  KGRHIVIPSILYTISQWITVASFEGIAMPNFDSVKRLTPI--LILVGLAARNRQQRVDQN 128

Query: 143 XXXXXXXXXXXXXXXXXXTFSVTGYTLV--LLNDAFTAANGVYMKKKLDAKDLGKYGLMY 200
                               SV  Y+L+  L+     AA  V  ++ L   +  +   M+
Sbjct: 129 KTFIIIGLSIASAFAVNLDLSVDRYSLMYGLVGAILQAAAFVLFEEHLQNYNYTEVLYMH 188

Query: 201 -YNALFMFVPAALVAWRTGDLERSAEYPHWN-DPLFLSQFLMSCIMGFVLSYSVMLCTQY 258
            +N+L  ++ A +V     +L  +  Y   +  PLF+  F +S   G +  ++   C + 
Sbjct: 189 SFNSLVFYLLADMV---RDELRDAFMYMITSAHPLFIIVFAVSMFAGVLFHFTTFSCLEK 245

Query: 259 NSALTTTIIGCLKNILVTYL 278
           N  L   I+  ++ ++ T+L
Sbjct: 246 NGPLNMQIVSNVRAVVETFL 265


>AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like
           protein protein.
          Length = 315

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 52/260 (20%), Positives = 110/260 (42%), Gaps = 10/260 (3%)

Query: 24  SALFYAIASFMITVVNKTVLTTYAFPSYQVLGLGQMVATIMVLWFGRSAKLVQYPPLDSG 83
           S + +  AS   ++++K ++T Y F    V+ + Q  AT+ V+   R   +++  P    
Sbjct: 11  SMIVFVAASVFCSLMSKIMVTRYFFDYPVVILMMQSAATLFVIEVTRVLGILKVAPYCFE 70

Query: 84  IARRIWPLPLIYLGNMATGLGGTKELSLPMFTALRRFSILMTMILERMVLGVRASWPVQ- 142
             R I    ++Y  +    +   + +++P F +++R + +  +IL  +    R     Q 
Sbjct: 71  KGRHIVIPSILYTISQWITVASFEGIAMPNFDSVKRLTPI--LILVGLAARNRQQRVDQN 128

Query: 143 XXXXXXXXXXXXXXXXXXTFSVTGYTLV--LLNDAFTAANGVYMKKKLDAKDLGKYGLMY 200
                               SV  Y+L+  L+     AA  V  ++ L   +  +   M+
Sbjct: 129 KTFIIIGLSIASAFAVNLDLSVDRYSLMYGLVGAILQAAAFVLFEEHLQNYNYTEVLYMH 188

Query: 201 -YNALFMFVPAALVAWRTGDLERSAEYPHWN-DPLFLSQFLMSCIMGFVLSYSVMLCTQY 258
            +N+L  ++ A +V     +L  +  Y   +  PLF+  F +S   G +  ++   C + 
Sbjct: 189 SFNSLVFYLLADMV---RDELRDAFMYMITSAHPLFIIVFAVSMFAGVLFHFTTFSCLEK 245

Query: 259 NSALTTTIIGCLKNILVTYL 278
           N  L   I+  ++ ++ T+L
Sbjct: 246 NGPLNMQIVSNVRAVVETFL 265


>Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical
           protein JC8.12b protein.
          Length = 304

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 51/258 (19%), Positives = 109/258 (42%), Gaps = 10/258 (3%)

Query: 26  LFYAIASFMITVVNKTVLTTYAFPSYQVLGLGQMVATIMVLWFGRSAKLVQYPPLDSGIA 85
           + +  AS   ++++K ++T Y F    V+ + Q  AT+ V+   R   +++  P      
Sbjct: 2   IVFVAASVFCSLMSKIMVTRYFFDYPVVILMMQSAATLFVIEVTRVLGILKVAPYCFEKG 61

Query: 86  RRIWPLPLIYLGNMATGLGGTKELSLPMFTALRRFSILMTMILERMVLGVRASWPVQ-XX 144
           R I    ++Y  +    +   + +++P F +++R + +  +IL  +    R     Q   
Sbjct: 62  RHIVIPSILYTISQWITVASFEGIAMPNFDSVKRLTPI--LILVGLAARNRQQRVDQNKT 119

Query: 145 XXXXXXXXXXXXXXXXTFSVTGYTLV--LLNDAFTAANGVYMKKKLDAKDLGKYGLMY-Y 201
                             SV  Y+L+  L+     AA  V  ++ L   +  +   M+ +
Sbjct: 120 FIIIGLSIASAFAVNLDLSVDRYSLMYGLVGAILQAAAFVLFEEHLQNYNYTEVLYMHSF 179

Query: 202 NALFMFVPAALVAWRTGDLERSAEYPHWN-DPLFLSQFLMSCIMGFVLSYSVMLCTQYNS 260
           N+L  ++ A +V     +L  +  Y   +  PLF+  F +S   G +  ++   C + N 
Sbjct: 180 NSLVFYLLADMV---RDELRDAFMYMITSAHPLFIIVFAVSMFAGVLFHFTTFSCLEKNG 236

Query: 261 ALTTTIIGCLKNILVTYL 278
            L   I+  ++ ++ T+L
Sbjct: 237 PLNMQIVSNVRAVVETFL 254


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 203 ALFMFVPAALVA-WRTGDLERSAEYPHWNDPLFLSQFLMSCIMGFVLSYS-VMLCTQYNS 260
           ALF +V   +VA + +  L ++ E  HW   L ++ FL+  I+  +  +S  +L T+ +S
Sbjct: 395 ALFFYVLFGIVAGYISARLYKTFEGIHWKTNLVMTAFLVPGILFTIFFFSNTLLWTKGSS 454

Query: 261 ALTTTIIGCLKNILVTYLGMVIGGDYVFSWLNFV--GLNISVFASLLYTYV---TFKRKP 315
           A      G L  +LV ++ + +   +V ++  F   G+   V  + +   V   TF  KP
Sbjct: 455 AAVP--FGTLLVLLVLWIFISVPMTFVGAYFGFKKRGIEAPVRTNKIPRQVPEQTFYTKP 512

Query: 316 SPAYVL 321
            P  ++
Sbjct: 513 LPGMLM 518


>AF040642-9|AAB94950.1|  589|Caenorhabditis elegans Hypothetical
           protein C50D2.2 protein.
          Length = 589

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 167 YTLVLLND--AFTAANGVYMKKKLDAKDLGKYGLMYYNALFMFVPAALVAWRTGDLERSA 224
           YT V + +  AF     + ++  L A  + +    Y ++L   V +     RTG L  ++
Sbjct: 97  YTYVGVGELWAFVIGWNIILEHMLGAAAVARSWSGYLDSLLGNVISNSTIARTGHLHEAS 156

Query: 225 EYPHWNDPLFLSQFLMSCIMGFVLSYSVMLCTQYNSALTTTIIGCLKNILVTYLGMVIGG 284
            +  + D   L  FL+  ++ F ++    + T +NS LT   IG +  ++V + G+    
Sbjct: 157 SF--FGDYPDLLAFLLIVLVAFFVALGSKVSTNFNSFLTILNIGIV--VIVVFYGITFAD 212

Query: 285 DYVFSWLNFVG 295
             ++S ++  G
Sbjct: 213 FSLWSGVDEKG 223


>Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 230 NDPLFLSQFLMSCIMGFVLSYSVMLCTQY-NSALTTTIIGCLKNILVTYLGMVIGGD 285
           N P F S+  M C+  F L  ++ LC+ + NS L T     L  I   YL  V+  D
Sbjct: 87  NMPWFSSEIKMFCLRYFYLGVALFLCSYFANSCLYTLCERRLHCIRKKYLKSVLRQD 143


>Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 230 NDPLFLSQFLMSCIMGFVLSYSVMLCTQY-NSALTTTIIGCLKNILVTYLGMVIGGD 285
           N P F S+  M C+  F L  ++ LC+ + NS L T     L  I   YL  V+  D
Sbjct: 87  NMPWFSSEIKMFCLRYFYLGVALFLCSYFANSCLYTLCERRLHCIRKKYLKSVLRQD 143


>X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein C
           protein.
          Length = 1254

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 230 NDPLFLSQFLMSCIMGFVLSYSVMLCTQY-NSALTTTIIGCLKNILVTYLGMVIGGD 285
           N P F S+  M C+  F L  ++ LC+ + NS L T     L  I   YL  V+  D
Sbjct: 87  NMPWFSSEIKMFCLRYFYLGVALFLCSYFANSCLYTLCERRLHCIRKKYLKSVLRQD 143


>AF016441-6|AAX55687.1|  440|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform b protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 19/211 (9%)

Query: 107 KELSLPMFTALRRFSILMTMILERMVLGVRASW---------PVQXXXXXXXXXXXXXXX 157
           K +S P  T  +   +++TM++ R+V G R SW                           
Sbjct: 217 KYVSFPTQTICKASKVVVTMLMGRLVRGQRYSWFEYGCGCTIAFGASLFLLSSSSKGAGS 276

Query: 158 XXXTFSVTGYTLV---LLNDAFTAANGVYMKKKLDAK-DLGKYGLMYYNALFMFVPAALV 213
                S +G  L+   LL DAFT     + K   D K  + KY +M+    F  +  A+ 
Sbjct: 277 TITYTSFSGMILMAGYLLFDAFTLN---WQKALFDTKPKVSKYQMMFGVNFFSAILCAVS 333

Query: 214 AWRTGDLERSAEYPHWNDPLFLSQFLMSCIMGFVLSYSVMLCTQYNSALTTTIIGCLKNI 273
               G L  S ++   +       FL+S + G +    +    +    +   +I  ++ +
Sbjct: 334 LIEQGTLWSSIKFGAEHVDFSRDVFLLS-LSGAIGQIFIYSTIERFGPIVFAVIMTIRQM 392

Query: 274 LVTYLGMVIGGDYVFSWLNFVGLNISVFASL 304
           L   L  ++ G +  ++L  +G  I VFA++
Sbjct: 393 LSIVLSTIMYG-HELTFLAAIGFMI-VFAAI 421


>AF016441-4|AAX55686.1|  425|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform a protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 19/211 (9%)

Query: 107 KELSLPMFTALRRFSILMTMILERMVLGVRASW---------PVQXXXXXXXXXXXXXXX 157
           K +S P  T  +   +++TM++ R+V G R SW                           
Sbjct: 202 KYVSFPTQTICKASKVVVTMLMGRLVRGQRYSWFEYGCGCTIAFGASLFLLSSSSKGAGS 261

Query: 158 XXXTFSVTGYTLV---LLNDAFTAANGVYMKKKLDAK-DLGKYGLMYYNALFMFVPAALV 213
                S +G  L+   LL DAFT     + K   D K  + KY +M+    F  +  A+ 
Sbjct: 262 TITYTSFSGMILMAGYLLFDAFTLN---WQKALFDTKPKVSKYQMMFGVNFFSAILCAVS 318

Query: 214 AWRTGDLERSAEYPHWNDPLFLSQFLMSCIMGFVLSYSVMLCTQYNSALTTTIIGCLKNI 273
               G L  S ++   +       FL+S + G +    +    +    +   +I  ++ +
Sbjct: 319 LIEQGTLWSSIKFGAEHVDFSRDVFLLS-LSGAIGQIFIYSTIERFGPIVFAVIMTIRQM 377

Query: 274 LVTYLGMVIGGDYVFSWLNFVGLNISVFASL 304
           L   L  ++ G +  ++L  +G  I VFA++
Sbjct: 378 LSIVLSTIMYG-HELTFLAAIGFMI-VFAAI 406


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 161 TFSVTGYTLVLLNDAFTAANGVYMKKKLDAKDLGKYGLMYYNALFMFVPAALVAWRTG-- 218
           T+   G  L+L +  FT    V +  K    D  +  L ++N + M     L  W+    
Sbjct: 137 TWLFIGILLILRSTFFTTTTVVEIDGKFVTFDFLEVFLYFFNVILMI--CLLKRWKMNLV 194

Query: 219 -----DLERSAEYPHWNDPLFLSQFLMSCIMGF--VLSYSVMLCTQYNSALTTTIIGCLK 271
                ++ +  +Y   N  +FL+ F+     G   +LS+ + L T Y+  L T+ +   +
Sbjct: 195 EKFPQNITKHMDYTPVNISIFLNCFVSIAFYGLFQLLSFILALIT-YHPNLETSPLNLYR 253

Query: 272 NILVTY 277
           +IL  Y
Sbjct: 254 SILNLY 259


>Z82284-4|CAB05288.1|  258|Caenorhabditis elegans Hypothetical
           protein T27E7.5 protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 196 YGLMYYNALFMFVPAALVAWRTGDLERSAEYPHWNDPLFLSQFLMSCIMGFVLSYSVMLC 255
           + L+ ++++ +FVPAA V +            H  +PL +  F  + IM  + + +V LC
Sbjct: 140 FRLITFDSIVLFVPAA-VLYYLSQRRNLNNKEHAKNPLQVHIFHQAMIMTSIKAITVALC 198

Query: 256 T 256
           T
Sbjct: 199 T 199


>U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           a protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 238 FLMSCIMGFVLSYSVMLCTQYNSALTTTIIGCLKNILVTYLGMVIGGDYVFSWLNFVGLN 297
           F +  I+ F  S  +M    + S+    I   + + L+  + +    DYVFS L      
Sbjct: 435 FALIPIITFTSSRKIM--HDFRSSKVFQIFALITSALILSINVYFISDYVFSRLGSEWYI 492

Query: 298 ISVFASLLYTYVTF 311
           I V A + + YV F
Sbjct: 493 IMVLAPITFAYVLF 506


>U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           b protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 238 FLMSCIMGFVLSYSVMLCTQYNSALTTTIIGCLKNILVTYLGMVIGGDYVFSWLNFVGLN 297
           F +  I+ F  S  +M    + S+    I   + + L+  + +    DYVFS L      
Sbjct: 349 FALIPIITFTSSRKIM--HDFRSSKVFQIFALITSALILSINVYFISDYVFSRLGSEWYI 406

Query: 298 ISVFASLLYTYVTF 311
           I V A + + YV F
Sbjct: 407 IMVLAPITFAYVLF 420


>AF016441-5|AAX55688.1|  408|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform c protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 107 KELSLPMFTALRRFSILMTMILERMVLGVRASW 139
           K +S P  T  +   +++TM++ R+V G R SW
Sbjct: 217 KYVSFPTQTICKASKVVVTMLMGRLVRGQRYSW 249


>U40800-10|AAA81495.2|  186|Caenorhabditis elegans Hypothetical
          protein D2096.2a protein.
          Length = 186

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 21 KILSALFYAIASFMITVVNKTVLTTYAFPSYQVLGLGQMVATIMVLWFGRSA 72
          +I+S L Y   ++ +T++   +L T+       +GL  +VA I  L F  SA
Sbjct: 46 RIISNLLYFQTNYFVTIITLFLLHTFISSQDIFVGLIAVVAVIATLIFAVSA 97


>AL023847-6|CAA19552.1|  297|Caenorhabditis elegans Hypothetical
           protein Y57A10C.10 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 239 LMSCIMGFVLSYSVMLCTQYNSALTTTIIGCLKNILV-TYLG 279
           L+S ++GF+ +   M   +Y   L  + IGC+ N L  TY G
Sbjct: 84  LISVLLGFIDTVLAMCTFEYEPHLNCSSIGCMVNDLFRTYWG 125


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.138    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,897,253
Number of Sequences: 27539
Number of extensions: 255545
Number of successful extensions: 768
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 19
length of query: 330
length of database: 12,573,161
effective HSP length: 82
effective length of query: 248
effective length of database: 10,314,963
effective search space: 2558110824
effective search space used: 2558110824
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)

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