GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002052-TA|BGIBMGA002052-PA|IPR011765|Peptidase M16,
N-terminal, IPR007863|Peptidase M16, C-terminal
         (466 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)             250   2e-66
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       77   3e-14
SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13)       50   4e-06
SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         48   1e-05
SB_7129| Best HMM Match : E-MAP-115 (HMM E-Value=0.066)                31   1.5  
SB_27883| Best HMM Match : TrbF (HMM E-Value=1.5)                      31   2.6  
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.6  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.5  
SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.5  
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             29   8.0  

>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score =  250 bits (612), Expect = 2e-66
 Identities = 121/314 (38%), Positives = 186/314 (59%), Gaps = 2/314 (0%)

Query: 134 VEILTDCIYNNNFATADIELQRKIVYAEMIEQDKNSNTVLYDYLHSTAFQGTPLAQTVMG 193
           V+IL D I N+    A+IE +R ++  EM E D     V++D+LH+TA+QGT L +T++G
Sbjct: 36  VDILADIIQNSTLGEAEIERERGVILREMQEVDTQLEEVVFDHLHATAYQGTALGRTILG 95

Query: 194 PSCNLYNFTDMTISRYLAKRFDPARTVLVAVGGVKHDQMVFLANNYLNKL--TPLKCVDI 251
           PS N+ + T   +  Y+ K +   R VL A GGV HD +V LA N+ + L  T  +   +
Sbjct: 96  PSRNVKSITQQDLKDYINKHYSAPRMVLAAAGGVNHDDLVKLAENHFSGLRSTYEEQDKV 155

Query: 252 GVARYTGSEIRFRNDSLPVANCVMVIEGPSFCHKDQIVMEVAASIISGWDKSQPGGINHA 311
              R++GSEIR R+D +P+A+  M +EG  + H D   + VA  ++  WD+S   G N  
Sbjct: 156 EPCRFSGSEIRVRDDDMPLAHVAMSVEGCGWTHPDYFALMVANMLVGSWDRSFSAGKNIG 215

Query: 312 VRIAREASTDKFCDSYKAVNITYKDTSLWGVQFMGPSVELEDMVLSIQGEWMNMCHTITD 371
            ++A++ + +    ++ + N  Y DT LWG+ F+   ++++D +  IQ EWM +C +ITD
Sbjct: 216 SKLAQQIAQNNLAHNFMSFNTCYTDTGLWGIYFVCDKMKIDDTIYCIQHEWMRICTSITD 275

Query: 372 AEVERAKRELKTKVLSKTESCAGTCHEIGRWVLYNGRRPPLHERICAIDSVFAQDIRRVC 431
            EV RAK  LKT +L + +     C +IGR +L  GRR PL E    I+ + A+ ++ V 
Sbjct: 276 HEVARAKNLLKTNILMQLDGSTPICEDIGRQMLTYGRRIPLPEIDMRIEMIDAKTVKDVA 335

Query: 432 NKYIYDKCPAVAAV 445
            KYIYD+CPAV  V
Sbjct: 336 TKYIYDRCPAVVGV 349


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 77.0 bits (181), Expect = 3e-14
 Identities = 41/146 (28%), Positives = 76/146 (52%), Gaps = 3/146 (2%)

Query: 37  DTQYSRLDNGLTIATEERESYNTCVGLFIDAGSRYEDNFENGVGHFFEHLAFKGT-KCRT 95
           +T  + L NG+ +A+EE     + VG+ ID GSRYE +  NGV H  E +AF+ T K  +
Sbjct: 416 ETHVTTLPNGIKVASEESFGQFSTVGVVIDGGSRYEVDHPNGVTHVIEKMAFQSTAKFPS 475

Query: 96  KTLLEDQISSSGAIFKCFTTREMVAYYADCLSYDLPRVVEILTDCIYNNNFATADIELQR 155
              +  ++   G +  C + R+ + Y     +  LP  VE+L++ +      + +++ Q+
Sbjct: 476 HDDIMQELEPVGGMADCTSFRDAIVYGTSSFTSGLPLAVEVLSEAVMRPQITSQEVDEQK 535

Query: 156 KIVYAEM--IEQDKNSNTVLYDYLHS 179
            +V  E+  +E   +   +L D +H+
Sbjct: 536 MLVQFELENLEMRLDPEPILTDMVHA 561


>SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13)
          Length = 209

 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 370 TDAEVERAKRELKTKVLSKTESCAGTCHEIGRWVLYNGRRPPLHERICAIDSVFAQDIRR 429
           T  E+ RAK++L++ ++   ES      +IGR VL  G R    E    I++V   DI R
Sbjct: 100 TQVELARAKKQLQSMLMMNLESRVIVFEDIGRQVLGLGERRSAGELYECIENVTMDDILR 159

Query: 430 VCNKYIYDKCPAVAAVGPTEGLPDYTKIRA 459
           V ++ +  K P+VAA G    LP Y  I A
Sbjct: 160 VSSRMLASK-PSVAAFGNLTFLPKYEDISA 188


>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 26/79 (32%), Positives = 40/79 (50%)

Query: 10 QIWRPVVTPVRNRPYPIPFIDFLKNIPDTQYSRLDNGLTIATEERESYNTCVGLFIDAGS 69
          +++     P+      IP    ++     Q + LDNGL +A+ E  S  + VGLF DAGS
Sbjct: 2  KLYASTAVPLNEPLTDIPAKGSVRERQTVQVTTLDNGLKVASLETYSPISRVGLFFDAGS 61

Query: 70 RYEDNFENGVGHFFEHLAF 88
          RYE +   G+ H   + A+
Sbjct: 62 RYETDSNLGITHMLRNAAY 80



 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 313 RIAREASTDKFCDSYKAVNITYKDTSLWGVQFMGPSVELEDMVLSIQGEWMNMCH-TITD 371
           + A E +   F  S  A+N++Y D+ L+G  F+    E+E ++ +  G++  +    ++D
Sbjct: 279 KAASEVAQGPFAVS--ALNMSYSDSGLFGCYFIASPAEIEKVMKASLGQFAKVAKGEVSD 336

Query: 372 AEVERAKRELKTKVLSKTESCAGTCHEIG 400
            E+ RAK +LK  +L   ES      +IG
Sbjct: 337 DELLRAKNQLKASLLMNNESGQTNFEDIG 365


>SB_7129| Best HMM Match : E-MAP-115 (HMM E-Value=0.066)
          Length = 432

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 369 ITDAEVERAKRELKTKVLSKTESCAGTCHEIGRWVLYNGRRPPLHERIC 417
           +  A + +    LKT       S   +CH  GRW   + RR PL  ++C
Sbjct: 77  LVTALIRKTHDRLKTIKERSRSSLKTSCHGEGRWRKKDSRRIPLERQVC 125


>SB_27883| Best HMM Match : TrbF (HMM E-Value=1.5)
          Length = 389

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 194 PSCNLYNFTDMTISRYLAKRFDPARTVLVAVGGVKHDQMVFLANNYLNK 242
           PS N  N+  MT +  + + +  A ++ + VGG   +   FL  NYL K
Sbjct: 227 PSANAMNYAKMTAAVEVRETYSIA-SIAILVGGAVLNATAFLGGNYLAK 274


>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 337 TSLWGVQ--FMGPSVELEDMVLSIQGEWMNMCH-TITDAEVERAKRELKTKVLSKTESCA 393
           T  W V   F GP  EL D+VL +Q   +++CH  IT   +      L  + L   E C 
Sbjct: 361 TRTWPVNGTFTGPQRELYDIVLEVQKTCISLCHKDITLDYLHTVMLTLLAEGLVAVELCP 420

Query: 394 GTCHEIGRWV 403
              H +G ++
Sbjct: 421 ---HHVGHYL 427


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 135 EILTDCIYNNNFATADIELQRKIVYA--EMIEQDKNSNTVLYDYLHSTAFQGTPLAQTVM 192
           EI+   IY+ +  + D EL+ +I  A     EQDK     +Y  L S    G  LAQT  
Sbjct: 835 EIVLSEIYDLDNPSDDEELETEIQDALETANEQDKEKILAVYSALRSPNLSGIELAQTST 894

Query: 193 GPS 195
           G S
Sbjct: 895 GSS 897


>SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 30  DFLKNIPDTQYSRLDNGLTIATEERES-YNTCVGLFID 66
           +FL+ + D  Y+R   G+ +   +R++ Y+ CV   +D
Sbjct: 265 EFLQQLQDQPYNRFQKGMKVEVADRKNMYSMCVATIVD 302


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 194 PSCNLYNFTDMTIS-RYLAKRFDPARTVLVAVGGVKHDQMVFLANNYLNK 242
           PS N  N+  MT +      R D A ++ + VGGV  +   F+  NYL K
Sbjct: 323 PSANTMNYAKMTAAVAARVIRIDMA-SIAILVGGVVLNATAFVGGNYLAK 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.137    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,893,629
Number of Sequences: 59808
Number of extensions: 647397
Number of successful extensions: 1479
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1470
Number of HSP's gapped (non-prelim): 11
length of query: 466
length of database: 16,821,457
effective HSP length: 85
effective length of query: 381
effective length of database: 11,737,777
effective search space: 4472093037
effective search space used: 4472093037
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)