GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002051-TA|BGIBMGA002051-PA|IPR008257|Peptidase M19,
renal dipeptidase, IPR002197|Helix-turn-helix, Fis-type
         (103 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    99   7e-23
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    89   2e-19
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   0.45 
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   0.59 
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    26   1.4  
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha...    26   1.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   1.8  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    25   2.4  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    24   4.2  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    24   4.2  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    24   4.2  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    24   5.5  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    23   7.3  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    23   7.3  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    23   7.3  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    23   9.6  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    23   9.6  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    23   9.6  

>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score =   99 bits (238), Expect = 7e-23
 Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 2/84 (2%)

Query: 1   MNRLGMIVDLSHVGENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNGGI 60
           MNRLGM+VDLSHV   +   A+ ++KAPVIFSHSS Y+L  H RNV DD+++ LK NGG+
Sbjct: 204 MNRLGMMVDLSHVSHRTMHDALDVTKAPVIFSHSSAYTLTEHERNVRDDVLERLKTNGGV 263

Query: 61  IMVNFFPDFVK--CAPNATLSDVA 82
           + VNF+ DF++   +  AT+ D A
Sbjct: 264 VQVNFYQDFIRKPGSDRATIDDAA 287


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 88.6 bits (210), Expect = 2e-19
 Identities = 43/91 (47%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1   MNRLGMIVDLSHVGENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNGGI 60
           MNRLGMIVDLSH    +   A+ +S AP  FSHSS   + +H RNVPDD++  +K+  G+
Sbjct: 239 MNRLGMIVDLSHTTPETMHQALDVSVAPAFFSHSSAKGVYDHPRNVPDDVLIRVKETDGV 298

Query: 61  IMVNFFPDFVKCAP-NATLSDVAGDSTVFAN 90
           +MVNF+P F+   P NAT+  V       AN
Sbjct: 299 VMVNFYPAFISPHPENATIDTVVEHIMHIAN 329


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.5 bits (58), Expect = 0.45
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 15  ENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNGGIIMVNFFPDFVKCAP 74
           ENS RA +K+ K+ +++      S+C+   N   D  KS K  G       + +      
Sbjct: 607 ENSNRA-LKILKSAILYRPHLRMSICSQLWNYHADFEKS-KSVGKFDSAK-YDEISSLFQ 663

Query: 75  NATLSDVAGDSTVFANSNLI 94
           +  LS ++ D++ F+N  L+
Sbjct: 664 SLILSSMSADTSNFSNQELV 683


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 27.1 bits (57), Expect = 0.59
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 21  AIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNGGIIMVNFFPDFVKCAPNATLSD 80
           A ++S+    FS    Y +   +   PD  IK + D  GI++     DF+  A +A + D
Sbjct: 465 AKRVSEELTGFSSKVSYQIRFDSTINPDTAIKFMTD--GILLRELSSDFLLTAYSAVIVD 522

Query: 81  VAGDSTVFANSNLILTAEIVGL 102
            A + +V  +  L L + IV L
Sbjct: 523 EAHERSVNTDILLGLLSRIVRL 544


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 26 KAPVIFSHSSVYSLCNHNR-NVPDDIIK 52
          K P   SHS+  ++C HN+ NV   ++K
Sbjct: 50 KGPACSSHSNDLAICQHNQLNVAPHLLK 77


>SPAC29B12.04 |snz1||pyridoxine biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 47  PDDIIKSLKDNGGIIMVNFFPDFVKCAPNATLSDVAGDSTVFANSNLILTAE 98
           P D++K     G + +VNF    V    +A L    G   VF  S + L+ +
Sbjct: 194 PIDLVKECAQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFLSGD 245


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 34  SSVYSLCNHNRNVPDDIIKSLKDNGGIIMVNFFPDFVKCAPNATLSDV 81
           SS Y       N+PDD++++     G + + FF   +K    A+L  V
Sbjct: 69  SSYYKWLMDLVNIPDDVVQNCAGLDGYVFLLFFKMGIKFLSFASLLGV 116


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 7   IVDLSHVGENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKS 53
           I  L    E +   A  + K  V++ +S ++   N   N PDD+  S
Sbjct: 63  ISSLESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNS 109


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 48  DDIIKSLKDNGGIIMVNFFPDF 69
           + ++K ++DNGGI+ V  F ++
Sbjct: 277 NSMVKFIQDNGGIVTVEDFGNY 298


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 42  HNRNVPDDIIKS---LKDNGGIIMVNFFPDFVKCAPNATLSDVAGDSTVFANSNLILTAE 98
           H+R +    IK    L DN G I ++ F    K   N+T +   G    F  S+  +  E
Sbjct: 514 HSRGIVHRDIKGANILVDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPE 573

Query: 99  IVGLT 103
           +V  T
Sbjct: 574 VVKQT 578


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 15/71 (21%), Positives = 30/71 (42%)

Query: 29  VIFSHSSVYSLCNHNRNVPDDIIKSLKDNGGIIMVNFFPDFVKCAPNATLSDVAGDSTVF 88
           V  ++ S+ S  +H     +D++    + G    +  +        N  +SDV G  T+ 
Sbjct: 405 VTSTYQSIESAVDHYVGQKNDVLVMFNNMGVTNNLTIYEVETNYTANEVVSDVFGHRTLT 464

Query: 89  ANSNLILTAEI 99
             ++  LTA +
Sbjct: 465 VGADKTLTASM 475


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 50  IIKSLKDNGGIIMVNFFPDFVKCAPNATLSDV 81
           + KS++++   +  +FFPD  K  P + LS++
Sbjct: 130 LCKSIEESKLGVSQSFFPDVTKRLPCSCLSEI 161


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 3   RLGMIVDLSHVGENSTRAA 21
           R+G+I+D+S +G NS  ++
Sbjct: 158 RIGLIIDISLLGMNSNESS 176


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 15  ENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNV 46
           +N+T+ +I L   P+  S + + SLC +  NV
Sbjct: 88  KNATQTSIVLEWDPLQLSTARLKSLCLYRNNV 119


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 16  NSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLK 55
           +S +A  K++  P  FS+  V      N+++P   I+  K
Sbjct: 77  DSAKATAKMALPPTAFSNYCVKPSLTRNKDIPRTSIRVSK 116


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 30  IFSHSSVYSLCNHNRNVPDDIIKSLKDNGGIIMVNFFPDFVKC-APNATL 78
           IF+  S + L N N+  PDD +     +  I ++ FFP    C  P  TL
Sbjct: 606 IFNRLSFF-LENTNQTAPDDSVLVRCSSKSIGLLFFFPLVKVCGVPRDTL 654


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 27  APVIFSHSSVYSLCN 41
           AP I+ H   +S+CN
Sbjct: 91  APAIYKHGFFFSICN 105


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 71  KCAPNATLSDVAGDSTVFANSN 92
           KCA N    D+  DS +FA SN
Sbjct: 753 KCASNPFGKDLEIDSNLFAPSN 774


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,042
Number of Sequences: 5004
Number of extensions: 18421
Number of successful extensions: 47
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 18
length of query: 103
length of database: 2,362,478
effective HSP length: 63
effective length of query: 40
effective length of database: 2,047,226
effective search space: 81889040
effective search space used: 81889040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)