GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002051-TA|BGIBMGA002051-PA|IPR008257|Peptidase M19,
renal dipeptidase, IPR002197|Helix-turn-helix, Fis-type
         (103 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0374 + 20026179-20026661,20027170-20027280,20027372-200274...    27   2.1  
12_02_0736 + 22650641-22650689,22650827-22650975,22651783-226518...    27   2.8  
11_06_0341 - 22507098-22507982,22508616-22508783,22518740-225188...    27   2.8  
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232...    26   4.9  
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62...    26   6.4  

>06_03_0374 +
           20026179-20026661,20027170-20027280,20027372-20027416,
           20029610-20029682,20029762-20029874,20030009-20030068,
           20031518-20031565,20031658-20031726,20032928-20033092,
           20033630-20033680,20034774-20034803
          Length = 415

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 41  NHNRNVPDDIIKSLKDN--GGIIMVNFFPDFVKCAPNATLSDVAGDSTVFANS 91
           N ++NVP+D +KS  +   G +  +    D+V     A +  V  DS + A S
Sbjct: 291 NIDKNVPEDAVKSFFEGMCGEVARLRLLGDYVHSTCIAFVEFVQADSAILALS 343


>12_02_0736 +
           22650641-22650689,22650827-22650975,22651783-22651839,
           22653534-22653611,22654688-22654953,22655249-22655351
          Length = 233

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 10  LSHVGENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDN 57
           +SH   +STRA +K   A + + +       +HN + PD ++ S   N
Sbjct: 119 VSHGSHSSTRATLKKDAAYLQYRYGGSTRAASHNTD-PDPLLSSFVGN 165


>11_06_0341 -
           22507098-22507982,22508616-22508783,22518740-22518893,
           22519396-22519728,22521106-22521374
          Length = 602

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/47 (27%), Positives = 27/47 (57%)

Query: 17  STRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNGGIIMV 63
           ST A   +++ PV+FS +   S  + +  V + + K+  ++GG I++
Sbjct: 461 STDALFIIAQLPVLFSLAFSVSAASQDHGVMEILTKNTMNSGGKILI 507


>10_08_0495 -
           18318028-18320399,18322450-18322981,18323097-18323200,
           18323653-18323701,18323979-18324119,18324889-18324957,
           18325048-18325137,18325301-18326251,18326831-18327502
          Length = 1659

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 9   DLSHVGENSTRAAIKLSKAPVIFSHSSVYS 38
           D    G+ ++ A+I L KA V+F+ ++VYS
Sbjct: 105 DAFKTGKKASVASIHLEKAAVLFNLAAVYS 134


>12_01_0076 +
          627796-627877,628706-628944,629129-629326,
          629415-629474,629596-629739,631700-631864,
          632636-632734,633114-633182,633274-633370,
          633994-634085,635021-635152,635446-635526,
          636284-636400,636497-636598
          Length = 558

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 6  MIVDL--SHVGENST---RAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKD 56
          +++DL  + VGE+++   +  I L+K PV    S   SLC+   N+  + +  L +
Sbjct: 28 VVLDLKTTEVGEDASPMYKEQIALTKIPVTLLRSKHSSLCSACENITSEAVNFLSE 83


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,005
Number of Sequences: 37544
Number of extensions: 107136
Number of successful extensions: 208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 5
length of query: 103
length of database: 14,793,348
effective HSP length: 71
effective length of query: 32
effective length of database: 12,127,724
effective search space: 388087168
effective search space used: 388087168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)