Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002051-TA|BGIBMGA002051-PA|IPR008257|Peptidase M19,
renal dipeptidase, IPR002197|Helix-turn-helix, Fis-type
(103 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54898| Best HMM Match : Peptidase_M19 (HMM E-Value=8.4e-12) 35 0.014
SB_49362| Best HMM Match : Peptidase_M19 (HMM E-Value=0.002) 32 0.074
SB_12843| Best HMM Match : Peptidase_M19 (HMM E-Value=0.002) 32 0.074
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 27 2.1
SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0) 27 2.8
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08) 27 2.8
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_6906| Best HMM Match : Peptidase_M13 (HMM E-Value=7.5e-23) 27 3.7
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 26 4.9
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.4
SB_10516| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.4
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 25 8.5
SB_28347| Best HMM Match : SBP_bac_3 (HMM E-Value=2.6) 25 8.5
SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.5
>SB_54898| Best HMM Match : Peptidase_M19 (HMM E-Value=8.4e-12)
Length = 226
Score = 34.7 bits (76), Expect = 0.014
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 1 MNRLGMIVDLSHVGENSTRAAIKLSKAP 28
MNRLGM VD+SHV + + +SKAP
Sbjct: 198 MNRLGMFVDISHVTTKTMHDVLDVSKAP 225
>SB_49362| Best HMM Match : Peptidase_M19 (HMM E-Value=0.002)
Length = 144
Score = 32.3 bits (70), Expect = 0.074
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 62 MVNFFPDFVKCAPNATLSDVA 82
MVNF+ +FV C ATLSDVA
Sbjct: 1 MVNFYNNFVTCKKEATLSDVA 21
>SB_12843| Best HMM Match : Peptidase_M19 (HMM E-Value=0.002)
Length = 142
Score = 32.3 bits (70), Expect = 0.074
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 62 MVNFFPDFVKCAPNATLSDVA 82
MVNF+ +FV C ATLSDVA
Sbjct: 1 MVNFYNNFVTCKKEATLSDVA 21
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 13 VGENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNGGIIMVNFFPDFVKC 72
VG+ +K K VI +Y LC ++ PD +KS + + N DF +
Sbjct: 1352 VGDIKLLRDLKSGKGRVIMRRDQIYKLCANHWIKPDMELKSNMGSDRSWVWNTLADFSEE 1411
Query: 73 APNA 76
P+A
Sbjct: 1412 EPSA 1415
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 23 KLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNG 58
K+SK + +++ L HN+++ + K LKDNG
Sbjct: 509 KISKMLKSLGYKAIHILGAHNKHLAKGLKKHLKDNG 544
>SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 761
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 49 DIIKSLKDNGGIIMVNFFPDFVKCAPNATLSDVAGDSTVFANS 91
DI K ++D GGI+ ++ + + G T+FA +
Sbjct: 264 DIAKDIQDGGGIVTAEDLKNYTAQTNKVPIKNTLGGRTMFATT 306
>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
Length = 718
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 12 HVGENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNGGIIMVNFFPDFVK 71
+ G+N A K V S+ Y L N NR +D++K + I+ P K
Sbjct: 425 YYGDNRFHARHPWEKRDVTAEESTFYDLDNENR---EDLLKGYRHLCFNIITPLLPKLFK 481
Query: 72 CAPNAT 77
P AT
Sbjct: 482 NLPKAT 487
>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4634
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 75 NATLSDVAGDSTVFANSNLILTAE 98
N TL ++ D TV AN+N I+T E
Sbjct: 2904 NQTLGEINFDVTVDANTNAIMTTE 2927
>SB_6906| Best HMM Match : Peptidase_M13 (HMM E-Value=7.5e-23)
Length = 223
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 2 NRLGMIVDLSHVGEN--STRAAIKL-SKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNG 58
NR+G + D N S+ A++ SK + + YS N N + +++ DNG
Sbjct: 67 NRIGRMFDKDGNLNNWWSSEASMNFNSKTQCLVHQYNTYSAFGKNLNGSQTLNENIADNG 126
Query: 59 GIIM 62
GI M
Sbjct: 127 GIKM 130
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 15 ENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNGG 59
E +T A ++ KAP + + + + N++ N + K +K N G
Sbjct: 306 EGNTEAENEVKKAPEVTTQGKLSKIQNNSPNAAIQLAKIIKSNFG 350
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 13 VGENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKD 56
+ ++ T A++ S+A + + SL H +V DD+ + LKD
Sbjct: 196 INQDDTAASMDTSEADLSKENGLSVSLFVHTDDVQDDLDEDLKD 239
>SB_10516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 58 GGIIMVNFFPDFVKCAPNATLSDVAGDSTVFANSNLIL 95
G I+ FF F+ P SD D+T+FA++N L
Sbjct: 73 GSILGPLFFLLFINDLPLFLSSDFVTDTTMFADNNTFL 110
>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
Length = 717
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 7 IVDLSHVGENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNGGIIMVNFF 66
I+D+S+ S A L + + S Y +H RN+ DII ++ + + +V F
Sbjct: 620 IMDVSYSNSISNSALALL----IASTESLSYLRMHHCRNITPDIIDLIRPDSKVFIVANF 675
Query: 67 P 67
P
Sbjct: 676 P 676
>SB_28347| Best HMM Match : SBP_bac_3 (HMM E-Value=2.6)
Length = 212
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 3 RLGMIVDLSHVGENSTRAAIKLSKAPVIFSHS 34
R+ + D +H+ EN T + +++AP IF+ +
Sbjct: 53 RVYVPTDSTHILENRTLKVVTIAEAPFIFAQT 84
>SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1788
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 48 DDIIKSLKDNGGIIMVNFFPDFVKCAPNATLSDVAGD--STVFANSNLILT 96
D + KSL DN ++M D +C PN + DV S A ++ ILT
Sbjct: 657 DWLPKSLPDNIYLVMSTLPGDEYECLPNLQVFDVFDQVPSLPLAEADSILT 707
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.134 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,117
Number of Sequences: 59808
Number of extensions: 122381
Number of successful extensions: 200
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 15
length of query: 103
length of database: 16,821,457
effective HSP length: 72
effective length of query: 31
effective length of database: 12,515,281
effective search space: 387973711
effective search space used: 387973711
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
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