GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002051-TA|BGIBMGA002051-PA|IPR008257|Peptidase M19,
renal dipeptidase, IPR002197|Helix-turn-helix, Fis-type
         (103 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70682-7|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    26   4.3  
AF125459-11|AAD12842.2|  315|Caenorhabditis elegans Serpentine r...    26   4.3  
Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical pr...    25   7.5  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    25   7.5  

>Z70682-7|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
          protein F08G5.7 protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 29 VIFSHSSVYSLCNHNRNVPDDI-IKSLKDNGGIIMVNFFPDFVKCAPNATLSDVAGDSTV 87
          +IFSH  +++ CN N ++ D +  K+ +D  G+        + K    + L+D +  + V
Sbjct: 5  LIFSHFVIHTFCNTNDHIEDFLRNKTAEDIIGLRQQYHRAIYKKKKEESALADASQPNLV 64

Query: 88 FANSNLI 94
           A+  ++
Sbjct: 65 LADGAVL 71


>AF125459-11|AAD12842.2|  315|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 24 protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 21  AIKLSKAPVIFSHSSVYS---LCNHNRNVPDDIIKSLKDNGG 59
           A+ LS A  IF    VYS   L   NR + +DI  S ++NGG
Sbjct: 274 AMMLSIAFHIFDVQHVYSPIALLISNRELRNDIFSSNRENGG 315


>Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical
           protein F47G4.4 protein.
          Length = 722

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 1   MNRLGMIVDLSHVGENSTRAAIKLSKAPVIFSHSSVYSLCNHNRNVPDDIIKSLKDNGGI 60
           +N  G+ +D   +G+N+ R  ++      + S+S  + LC       +D+     DN  I
Sbjct: 263 VNANGLDLDFICIGDNTERLEMRTYAIEELLSYSPSHELCGSIYEEDEDV-----DNSPI 317

Query: 61  IMVNFFPDFVK 71
             V   P+  +
Sbjct: 318 DEVKALPELTE 328


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 30  IFSHSSVYSLCNHNRNVPDDIIKSLKDNGGIIMVNFFPDFVK 71
           IFS+ +    C+ ++ V DD+ + +  NGG +M +  PD+ +
Sbjct: 636 IFSYHTYCVHCSVDQEVSDDLKEKIPLNGGKLMDD--PDYAE 675


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,353
Number of Sequences: 27539
Number of extensions: 94956
Number of successful extensions: 236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 4
length of query: 103
length of database: 12,573,161
effective HSP length: 71
effective length of query: 32
effective length of database: 10,617,892
effective search space: 339772544
effective search space used: 339772544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)