Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002050-TA|BGIBMGA002050-PA|IPR008257|Peptidase M19,
renal dipeptidase
         (122 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    51   6e-08
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    37   8e-04
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    30   0.12 
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   3.4  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   4.5  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    24   5.9  
SPBP23A10.03c |||ACN9 family mitochondrial protein|Schizosacchar...    24   5.9  

>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 50.8 bits (116), Expect = 6e-08
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 16/102 (15%)

Query: 27  RERLEIAKQILKEV----PLIDGHNDLPWNIRKFLRN--QVNDFELDTDLTVVEPWSISK 80
           RE  E+A+Q  KE+     ++D HND P+ +R  LRN  Q+ +F+ +  LT         
Sbjct: 6   REEKELAQQRFKEICKHAKIVDTHNDFPYLLRVQLRNKLQLAEFDFENGLT--------- 56

Query: 81  YSHTDLPRLREGMVGAQYIEDIMMWHLKNTALSNFRKNATVI 122
            SHTDL ++R+G VG Q+    +     N    +F    TV+
Sbjct: 57  -SHTDLVKMRQGQVGVQFFSCFIECKNPNYLYQDFDTPTTVV 97


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 37.1 bits (82), Expect = 8e-04
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 11/63 (17%)

Query: 36  ILKEVPLIDGHNDLPWNIRKFLRNQVNDFELDTDLTVVEPWSISKYSHTDLPRLREGMVG 95
           +L   PLIDGHNDLP  +R+   N++ +  L+                TD+ RLR+G VG
Sbjct: 57  VLTHFPLIDGHNDLPIYLRENYDNRLLNISLE-----------HLPGQTDIFRLRQGHVG 105

Query: 96  AQY 98
            Q+
Sbjct: 106 GQF 108


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 51  WNIRKFLRNQVNDFELDTDLTVVEPWSISKYSHTDLPRLREGM 93
           W +   L + + D  ++   +VVE W  S  +H DL +L  G+
Sbjct: 171 WLMNSLLLDGLRDLLVEKQPSVVEAWVCSSQTHEDLLKLLNGL 213


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 24  SYDRERLEIAKQILKEVPLIDGHNDLPWNIRKFLRNQVNDFELDTDLT 71
           +Y+RE LE  K++ +    ID  N   W+ R ++    ND+  +  LT
Sbjct: 126 NYERE-LEFTKKMFE----IDSKNYHVWSYRVWILQNFNDYSQELKLT 168


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 76  WSISKYSHTDLPRLREGMVGAQYIEDIM 103
           W+   Y +TD PR  +G++G   +  I+
Sbjct: 406 WAPIMYPNTDTPRFIKGLIGLLVVGGIV 433


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 69  DLTVVEPWSISKYSHTDLPRLREGMVGAQYIEDIMMWHLKNTALSNFR 116
           DL + EP  I +  HT    LR+ +V  +     ++  L N  + N +
Sbjct: 35  DLQIDEPLEILEGDHTQYAGLRDSLVTYKSENSYVLKALLNAKIENVK 82


>SPBP23A10.03c |||ACN9 family mitochondrial
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 115

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 61  VNDFELDTDLTVVEPWSISKYSHTD-LPRLREGMVGAQY 98
           ++ +E   D    E W   KYS+TD L  L +  +G  Y
Sbjct: 64  LSSWERYADALENESWKQEKYSNTDLLESLNDQQIGQLY 102


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,227
Number of Sequences: 5004
Number of extensions: 19222
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 7
length of query: 122
length of database: 2,362,478
effective HSP length: 65
effective length of query: 57
effective length of database: 2,037,218
effective search space: 116121426
effective search space used: 116121426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)