Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002050-TA|BGIBMGA002050-PA|IPR008257|Peptidase M19,
renal dipeptidase
         (122 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42490.1 68415.m05256 copper amine oxidase, putative similar ...    28   1.5  
At3g06150.1 68416.m00707 expressed protein                             26   6.1  

>At2g42490.1 68415.m05256 copper amine oxidase, putative similar to
           copper methylamine oxidase precursor (MAOXII)
           [Arthrobacter sp.] SWISS-PROT:Q07123
          Length = 776

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 67  DTDLTVVEPWSISKYSHTDLPRLR 90
           D DL +V+PW +  +S  D P  R
Sbjct: 236 DMDLVMVDPWCVGYHSEADAPSRR 259


>At3g06150.1 68416.m00707 expressed protein 
          Length = 594

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 88  RLREGMVGAQYIEDIMMWHLKNTAL 112
           R R+G +G QY  D+M+ H+   AL
Sbjct: 567 RWRDGEIGHQYFVDLMLVHVLLNAL 591


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,439
Number of Sequences: 28952
Number of extensions: 90856
Number of successful extensions: 197
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 2
length of query: 122
length of database: 12,070,560
effective HSP length: 73
effective length of query: 49
effective length of database: 9,957,064
effective search space: 487896136
effective search space used: 487896136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)