GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002050-TA|BGIBMGA002050-PA|IPR008257|Peptidase M19,
renal dipeptidase
         (122 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0444 - 22974979-22975251,22975338-22975379,22975471-229754...    29   1.4  
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770...    28   2.4  
04_01_0199 - 2377406-2377573,2377649-2377730,2378006-2378274,237...    28   2.4  
05_04_0220 - 19167485-19169290                                         27   3.1  
01_05_0175 - 18936752-18937621,18938855-18941641                       27   3.1  
03_06_0401 - 33678814-33679185,33679564-33679676,33679785-336798...    27   5.5  
03_02_0597 - 9722340-9722639,9723095-9723486,9723596-9723785,972...    27   5.5  

>02_04_0444 -
           22974979-22975251,22975338-22975379,22975471-22975479,
           22975783-22975968,22976063-22976299,22982410-22982625,
           22982729-22983059,22983410-22983522,22984538-22984647,
           22985325-22985439
          Length = 543

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 67  DTDLTVVEPWSISKYSHTDLPRLR 90
           D DL +V+PW    YS  D P  R
Sbjct: 104 DMDLVMVDPWCAGYYSDADAPNRR 127


>06_03_1122 -
           27775141-27775333,27775414-27775604,27775907-27777099,
           27777206-27777353,27777534-27777609,27777696-27777818,
           27777886-27778050,27778169-27778259,27778580-27778664,
           27778745-27778900,27778992-27779048,27779138-27779236,
           27779381-27779499,27780145-27780202
          Length = 917

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 40  VPLIDGHND---LPWNIRKFLRNQVNDFELDTDLTVVEPWSISKY 81
           +P + G ND   +P++   FL    NDF LD  L+  +    S Y
Sbjct: 726 IPSLQGENDSTAIPYSTSNFLSPSQNDFPLDQTLSSADCLDESGY 770


>04_01_0199 -
           2377406-2377573,2377649-2377730,2378006-2378274,
           2379648-2379788,2380891-2381076,2381529-2381765,
           2382077-2382292,2382389-2382719,2382842-2382954,
           2383288-2383602,2383713-2383840,2385274-2385547
          Length = 819

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 67  DTDLTVVEPWSISKYSHTDLPRLR 90
           D DL  V+PW    YS  D P  R
Sbjct: 268 DMDLVTVDPWCAGYYSDADAPSRR 291


>05_04_0220 - 19167485-19169290
          Length = 601

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 90  REGMVGAQYIEDIMMWHLKNTALSN 114
           R+G VG QY  D+M+ H+   A+ N
Sbjct: 576 RDGKVGHQYFVDLMLGHVLLNAICN 600


>01_05_0175 - 18936752-18937621,18938855-18941641
          Length = 1218

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 45  GHNDLPWNIRKFLRNQVNDFELDTDLTVVEPWSISKYSHTDLPRLREGMVGAQYIEDIMM 104
           GH D     R FLR  +  FE  ++  V+E  S +K+    L R    ++ +  + D + 
Sbjct: 654 GHGD---GTRLFLRPSMRKFE--SNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIF 708

Query: 105 WHLKNTALSN 114
           W ++ T LSN
Sbjct: 709 WQMQETMLSN 718


>03_06_0401 -
           33678814-33679185,33679564-33679676,33679785-33679834,
           33680024-33680103,33680541-33680635,33681079-33681124
          Length = 251

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 54  RKFLRNQVNDFELDTDLTVVEPWSISKYSHTDLPRLREGMVGAQYIEDIM 103
           R FL  Q   F  + +L +V   +I  YS   + RL+E        +D++
Sbjct: 177 RPFLLGQTERFVAEVELFLVSHLNIDAYSRLRVQRLKESTSHVSREQDVL 226


>03_02_0597 -
           9722340-9722639,9723095-9723486,9723596-9723785,
           9724416-9724603,9725626-9725719
          Length = 387

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 61  VNDFELDTDLTVVEPWSISKYSHTDLPRLREGMVGAQY 98
           ++D     +  +VE W+I K +  D P+L + ++  QY
Sbjct: 274 IDDSRAKPERNIVE-WAIPKINKKDFPKLADPVLNGQY 310


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,921
Number of Sequences: 37544
Number of extensions: 102004
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 7
length of query: 122
length of database: 14,793,348
effective HSP length: 74
effective length of query: 48
effective length of database: 12,015,092
effective search space: 576724416
effective search space used: 576724416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)