GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002050-TA|BGIBMGA002050-PA|IPR008257|Peptidase M19,
renal dipeptidase
         (122 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54898| Best HMM Match : Peptidase_M19 (HMM E-Value=8.4e-12)         33   0.065
SB_34032| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22)                 27   4.3  
SB_34769| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_54071| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.7  
SB_22194| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.5  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.5  

>SB_54898| Best HMM Match : Peptidase_M19 (HMM E-Value=8.4e-12)
          Length = 226

 Score = 33.1 bits (72), Expect = 0.065
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 9/46 (19%)

Query: 53 IRKFLRNQVNDFELDTDLTVVEPWSISKYSHTDLPRLREGMVGAQY 98
          +RK+  N++ +  LDT          S   HTD+PRLR+G VG Q+
Sbjct: 1  MRKYYMNRLENITLDTG---------SPELHTDIPRLRKGKVGGQF 37


>SB_34032| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22)
          Length = 673

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 27  RERLEIAKQILKEVPLIDGHNDLPWNIRKF 56
           ++ LE  K+++ E P  DGH D   N R F
Sbjct: 236 KKALESRKKVIPETPAFDGHLDKKKNRRIF 265


>SB_34769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 49  LPWNIRKFLRNQVNDFELDTDLTVVEPW 76
           LP  IR+FL+    D E+   + +V PW
Sbjct: 263 LPLQIREFLKLNAPDLEIPLRVDIVLPW 290


>SB_54071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 50 PWNIRKFLRNQVNDFELDTDLTVVEPWSISKYSHTDLPRLREG 92
          P+   +F  N+ +DF L  D+T   P SI+   H + P L +G
Sbjct: 2  PFTASQFTVNETSDFSLHCDVTGSPPVSITWSRHGE-PLLVQG 43


>SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1756

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 50  PWNIRKFLRNQVNDFELDTDLTVVEPWSISKYSHTDLPRLREG 92
           P+   +F  N+ +DF L  D+T   P SI+   H + P L +G
Sbjct: 591 PFTASQFTVNETSDFSLHCDVTGSPPVSITWSRHGE-PLLVQG 632


>SB_22194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 3/28 (10%)

Query: 46 HNDLPWNIRKFLRNQVN--DFELDTDLT 71
          HNDL   +++F RNQV+  DF  D DLT
Sbjct: 21 HNDLEDAVQEFQRNQVDGEDF-FDLDLT 47


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 28   ERLEIAKQILKEVPLIDGHNDLPWNIRKFLRNQVNDFELDTDL----TVVEPWSISKYSH 83
            E  +I + + ++VP +D   D+ + +RK + N    F+L   L     V++ ++++    
Sbjct: 3319 EHKDINEILKRQVPALDKKFDINYILRKNIANISKTFDLTRALHEYTRVLDTFNVNHVMR 3378

Query: 84   TDLPRLRE 91
               P LRE
Sbjct: 3379 KAFPGLRE 3386


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,415,922
Number of Sequences: 59808
Number of extensions: 120632
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 7
length of query: 122
length of database: 16,821,457
effective HSP length: 74
effective length of query: 48
effective length of database: 12,395,665
effective search space: 594991920
effective search space used: 594991920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)