GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002050-TA|BGIBMGA002050-PA|IPR008257|Peptidase M19,
renal dipeptidase
         (122 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   6.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 24  SYDRERLEIA----KQILKEVPLIDGHNDLPWNIRKFL 57
           +Y+R+   +A    KQIL     ++ HN  P++I  FL
Sbjct: 445 TYERDTCLLASDALKQILSAAYNVELHNSSPFSIYSFL 482


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 24  SYDRERLEIA----KQILKEVPLIDGHNDLPWNIRKFL 57
           +Y+R+   +A    KQIL     ++ HN  P++I  FL
Sbjct: 483 TYERDTCLLASDALKQILSAAYNVELHNSSPFSIYSFL 520


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 71  TVVEPWSISKYSHTDLPRLR 90
           TV+   +IS  S TDLP++R
Sbjct: 283 TVLTLSTISLDSRTDLPKVR 302


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 6.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 52  NIRKFLRNQVNDFELDTDLT 71
           N+  +L     DF  +TD+T
Sbjct: 205 NVPAYLNTYKGDFPTETDIT 224


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,840
Number of Sequences: 429
Number of extensions: 1115
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 122
length of database: 140,377
effective HSP length: 51
effective length of query: 71
effective length of database: 118,498
effective search space:  8413358
effective search space used:  8413358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)