Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002049-TA|BGIBMGA002049-PA|undefined
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   1.4  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   3.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   4.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   4.2  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   4.2  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   5.5  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   5.5  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    24   7.3  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    24   7.3  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    24   7.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   7.3  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    24   9.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   9.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    24   9.7  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 10  QDKAHIY-KFRTTTFGPSVYRAMSPARWKIFPPSFKPSKLIKASHRQSSH 58
           ++K  I+ K++  + G +V+ A+SP   + FP   + S L  +S ++S H
Sbjct: 142 EEKLEIFSKWKYESPGNNVFEAISPHERESFPSEPQVSVLFTSSVKRSPH 191


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 13/105 (12%)

Query: 43  FKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTY-TASSRSIQAQSRLTADF 101
           F+P+  + +S  +S+ +   S P     S +TALP P+   Y    S+       L  D 
Sbjct: 185 FRPNSYLASSVEESNRANNTS-PYPPSNSSVTALPKPSKIAYIPVLSKPKSFNGTLVEDP 243

Query: 102 EQHWRQ-----------SRSIQAQFRLTANFEQHWHLQANLSTDN 135
            + + +           S  ++A    T N     HL  NLS DN
Sbjct: 244 VEEFGEDDIASDFFSSPSADLEADDFTTLNNSNAGHLLQNLSNDN 288


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 25  PSVYRAMSPARWKIFPPSFKPSKLIKASHRQSSHSKPA 62
           PS+  A+ P   K+ PP    + +   S R SS + PA
Sbjct: 188 PSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPA 225


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 45  PSKLIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRLTADFEQH 104
           PS+    S+     S P+ QP +   +R  +LP     T T   R     S+   +  QH
Sbjct: 665 PSQQSTVSNHHRKESIPSKQPTEGQHARQESLPSQQT-TETKHLRKESTPSKQPTE-GQH 722

Query: 105 WRQ 107
            RQ
Sbjct: 723 TRQ 725


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 54  RQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRL 97
           +QSS S P  QP      +    P P A +Y     S++  + L
Sbjct: 306 KQSSASHPVLQPPAPSTLQFNPSPSPAAPSYPPVDASVKQAADL 349


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 30  AMSPARWKIFPPSFKPSKLIKASHRQSSHSKPASQPQQDHRSR---LTALPGPTARTYTA 86
           A  P+ WK  PP   PS L +   R+ S +   + PQ +  +      A+P  T++T + 
Sbjct: 621 APKPSPWKSLPPKHLPS-LDETISREMSIASSEALPQVEKSNSDQPPVAIPS-TSKTGSP 678

Query: 87  SSRSIQAQSRLTADFEQHWRQSRSIQAQ 114
            ++     + +  + ++  +Q+ +++++
Sbjct: 679 WAKVSDVSTSMAQEIQRMEKQNENLKSK 706


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 48  LIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRLTADFE 102
           L + SH+    + P S+          ALPG T+    +++ S  +++ ++ D+E
Sbjct: 426 LPERSHKHRHSAPPRSKLISSKSEAGRALPGNTSGASISNTSSPHSEASISKDYE 480


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/47 (19%), Positives = 25/47 (53%)

Query: 82  RTYTASSRSIQAQSRLTADFEQHWRQSRSIQAQFRLTANFEQHWHLQ 128
           + Y +SSR +    ++  D  ++W+ ++++    +   NF +  +L+
Sbjct: 529 QNYISSSRLVHVDHQILQDRSKYWKINQAMLVTLQRLYNFYRFQYLE 575


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 2   PESRLRHFQDKAHIYKFRTTTFGPSVYRAMSPA--RWKIFPPSFKPSKLIKASHRQSSHS 59
           P+ R       AH Y    T   P++   MSPA      +P    PS L ++    ++  
Sbjct: 54  PQPRRARRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESFSNDTNLL 113

Query: 60  KPASQP 65
            PA+ P
Sbjct: 114 DPAALP 119


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 45  PSKLIKASHRQSSHSKPASQPQQDHRSRLTALP 77
           P+     S     HS PAS P    +SR  +LP
Sbjct: 316 PTLSAVTSDSAQPHSLPASMPSSQPQSRSESLP 348


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 58  HSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRLTADFEQHWRQSRSIQAQFRL 117
           H+ P S   Q+   +  +      R  T SS SI      +AD E   ++ R+   Q + 
Sbjct: 218 HAVPVSLDTQNLSQQNLSKSNSDVRLST-SSPSITVD--FSADKETDEKRERNCDKQVKA 274

Query: 118 TANFEQHWHLQANLS 132
             N    WH  + +S
Sbjct: 275 AQNILPEWHATSTIS 289


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 6    LRH-FQDKAHIYKFRTTTFG 24
            LRH FQ++    KFR+T FG
Sbjct: 1012 LRHYFQERMKALKFRSTLFG 1031


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 65  PQQDHR---SRLTALPG-PTARTYTASSRSIQAQSRLTADFEQ--HWRQSRSIQ 112
           P  DH    S  + LP  P + +Y ASS+   +  +LT+  ++   W  S S+Q
Sbjct: 197 PALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSSLKKFYSWTSSSSLQ 250


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 38  IFPPSFKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASS 88
           IF  S  PS+    S   SS+S PA+          T+   PT+  YT SS
Sbjct: 86  IFSESATPSETNSYSSPVSSYSDPATSQLPSS----TSFFSPTSSEYTPSS 132


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 65  PQQDHRSRLTALPGPTARTYTASSRSIQAQSRLTAD 100
           P Q+H+    +       TY +S+R++Q+Q R   D
Sbjct: 309 PIQEHKRFKQSPVASNMPTYGSSNRTVQSQKRSIRD 344


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.125    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,245
Number of Sequences: 5004
Number of extensions: 22879
Number of successful extensions: 80
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 19
length of query: 137
length of database: 2,362,478
effective HSP length: 66
effective length of query: 71
effective length of database: 2,032,214
effective search space: 144287194
effective search space used: 144287194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)