Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002049-TA|BGIBMGA002049-PA|undefined
(137 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 34 0.039
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 0.48
At1g24040.2 68414.m03035 GCN5-related N-acetyltransferase (GNAT)... 29 1.5
At1g24040.1 68414.m03034 GCN5-related N-acetyltransferase (GNAT)... 29 1.5
At1g72390.1 68414.m08373 expressed protein 28 2.6
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica... 27 4.5
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica... 27 4.5
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica... 27 4.5
At2g21800.1 68415.m02591 expressed protein 27 4.5
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ... 27 5.9
At3g19260.1 68416.m02443 longevity-assurance (LAG1) family prote... 27 5.9
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A) 27 5.9
At2g20310.1 68415.m02372 expressed protein 27 5.9
At1g17540.1 68414.m02157 protein kinase-related similar to serin... 27 5.9
At5g58480.1 68418.m07324 glycosyl hydrolase family 17 protein si... 26 7.9
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 26 7.9
At2g22720.3 68415.m02692 expressed protein 26 7.9
At2g22720.2 68415.m02691 expressed protein 26 7.9
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 33.9 bits (74), Expect = 0.039
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 16 YKFRTTTFGPSVYRAMSPARWKIFPPSFKPSKLIKASHRQS-SHSKPASQPQQDHRSRLT 74
++ +T + PS RA SP++ + PS S+ S QS S S+ SQ Q +S+
Sbjct: 748 FQTQTQSQSPSQTRAQSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQ 807
Query: 75 ALPGPTARTYTASSRSIQAQS 95
+ +T + S QAQS
Sbjct: 808 SQSPSQTQTQSPSQTQAQAQS 828
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 30.3 bits (65), Expect = 0.48
Identities = 21/84 (25%), Positives = 35/84 (41%)
Query: 12 KAHIYKFRTTTFGPSVYRAMSPARWKIFPPSFKPSKLIKASHRQSSHSKPASQPQQDHRS 71
K + R + SV R++SP R +I P S+ HR+ +H P R
Sbjct: 251 KRRLSNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRR 310
Query: 72 RLTALPGPTARTYTASSRSIQAQS 95
R + P R+ + +R ++ S
Sbjct: 311 RSPSPPARRRRSPSPPARRRRSPS 334
>At1g24040.2 68414.m03035 GCN5-related N-acetyltransferase (GNAT)
family protein contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 319
Score = 28.7 bits (61), Expect = 1.5
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 42 SFKPSKLIKASHRQSSHSKPASQPQQDHRSRLT-ALPGPTARTYTASSRSIQAQSRLTAD 100
S KP++ K SSH P + HRS L A P + T T + + A
Sbjct: 14 SLKPTQSTKFGFSSSSHRYPLLYSCKSHRSNLRFAFPPSSVSTATETGEENSKSTGNYAF 73
Query: 101 FEQHWRQSR 109
E+ +R R
Sbjct: 74 LEESFRTGR 82
>At1g24040.1 68414.m03034 GCN5-related N-acetyltransferase (GNAT)
family protein contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 319
Score = 28.7 bits (61), Expect = 1.5
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 42 SFKPSKLIKASHRQSSHSKPASQPQQDHRSRLT-ALPGPTARTYTASSRSIQAQSRLTAD 100
S KP++ K SSH P + HRS L A P + T T + + A
Sbjct: 14 SLKPTQSTKFGFSSSSHRYPLLYSCKSHRSNLRFAFPPSSVSTATETGEENSKSTGNYAF 73
Query: 101 FEQHWRQSR 109
E+ +R R
Sbjct: 74 LEESFRTGR 82
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 27.9 bits (59), Expect = 2.6
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 40 PPSFKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRLTA 99
PP P + ++Q + QPQQ L P ++ ++S Q Q +L
Sbjct: 909 PPKLMPGMMNLYMNQQQQQQQLQQQPQQQQLQHQQQLQQPMSQPSQQLAQSPQQQQQL-- 966
Query: 100 DFEQHWRQSRSIQAQFRLTAN 120
+QH Q + Q Q + TA+
Sbjct: 967 --QQH-EQPQQAQQQQQATAS 984
>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1150
Score = 27.1 bits (57), Expect = 4.5
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 40 PPSFKPSKL--IKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRL 97
P + KL ++ Q + + A+Q Q ++ L ASS S L
Sbjct: 597 PQQLQQHKLQQLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGSMASSVITPPSSSL 656
Query: 98 TADFEQHWRQSRSI-QAQFRLTANFEQHWHLQANLSTDN 135
F+Q +QS+ + QA L A+ Q ++ + S+ N
Sbjct: 657 NQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSN 695
>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1164
Score = 27.1 bits (57), Expect = 4.5
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 40 PPSFKPSKL--IKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRL 97
P + KL ++ Q + + A+Q Q ++ L ASS S L
Sbjct: 596 PQQLQQHKLQQLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGSMASSVITPPSSSL 655
Query: 98 TADFEQHWRQSRSI-QAQFRLTANFEQHWHLQANLSTDN 135
F+Q +QS+ + QA L A+ Q ++ + S+ N
Sbjct: 656 NQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSN 694
>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1165
Score = 27.1 bits (57), Expect = 4.5
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 40 PPSFKPSKL--IKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRL 97
P + KL ++ Q + + A+Q Q ++ L ASS S L
Sbjct: 597 PQQLQQHKLQQLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGSMASSVITPPSSSL 656
Query: 98 TADFEQHWRQSRSI-QAQFRLTANFEQHWHLQANLSTDN 135
F+Q +QS+ + QA L A+ Q ++ + S+ N
Sbjct: 657 NQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSN 695
>At2g21800.1 68415.m02591 expressed protein
Length = 475
Score = 27.1 bits (57), Expect = 4.5
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 45 PSKLIKASHRQSSHSKPASQPQQDHRSRLTALP--GPTARTYTASSRSIQAQS 95
PS + +AS QSS SK A + DH T + G +T T+ S S+ A S
Sbjct: 134 PSWMRRASF-QSSLSKDAIEVDSDHEKEDTGVEKMGRKKQTITSKSTSLSADS 185
>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
ribosomal protein L24, Arabidopsis thaliana,
EMBL:AC006282
Length = 163
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 37 KIFPPSFKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALP 77
+ F KPSKL + + H K A+Q R R T P
Sbjct: 40 RYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKP 80
>At3g19260.1 68416.m02443 longevity-assurance (LAG1) family protein
similar to Alternaria stem canker resistance protein
(ASC1) [Lycopersicon esculentum] GI:7688742; contains
Pfam profile PF03798: Longevity-assurance protein (LAG1)
Length = 296
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 9 FQDKAHIYKFRTTTFGPSVYRAMSPARWKIFPPSFKPSKLIKAS 52
F + A I+K+ FG SV A+ W + + P +I+A+
Sbjct: 186 FMETAKIFKYSEKEFGASVCFALFAVSWLLLRLIYFPFWIIRAT 229
>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
Length = 164
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 37 KIFPPSFKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALP 77
+ F KPSKL + + H K A+Q R R T P
Sbjct: 40 RYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKP 80
>At2g20310.1 68415.m02372 expressed protein
Length = 430
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 43 FKPSKLIKASHRQSSHSKPASQP-----QQDHRSRLTALPGPTARTYT 85
F +++ ++SH SS P P Q++ R TALPG + +T
Sbjct: 287 FNNAQVSQSSHHSSSTVAPTLNPETYTQQRNVRDHCTALPGSQSNVFT 334
>At1g17540.1 68414.m02157 protein kinase-related similar to
serine/threonine protein kinase Fen [Lycopersicon
esculentum] GI:1809259
Length = 733
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 61 PASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRLTADFEQHWRQSRSIQAQFRLTAN 120
P P + + PGPT+ T + S RS A + + H++ S + L+
Sbjct: 178 PQHPPHPSKHPSMMSDPGPTSSTSSESGRSSPALNGELSPPTPHYKPSLYRSSMSELSNE 237
Query: 121 FEQHWHLQANLS 132
F ++N S
Sbjct: 238 FPSDHSAESNAS 249
>At5g58480.1 68418.m07324 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 476
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 69 HRSRLTA-LPGPTARTYTASSRSIQAQSRLTADFEQHW 105
H + TA LP P TY S ++ +FE+HW
Sbjct: 293 HLEKKTASLPRPPVETYIESLLDEDQRNLSAGNFERHW 330
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 51 ASHRQSSHSKPASQPQQDHRSRLTA 75
A+HR+S+ S AS P DH+ TA
Sbjct: 176 ANHRRSASSGGASPPSDDHKPDDTA 200
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 26.2 bits (55), Expect = 7.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 30 AMSPARWKIFPPSFKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSR 89
A SP R + P S +S Q +HS+P+S + + SR + ASS
Sbjct: 204 AHSPHREEKRPVSANGHSRPSSSGSQMNHSRPSSSGSKMNHSRPATSGSQMPNSRPASSG 263
Query: 90 SIQAQSR 96
S Q QSR
Sbjct: 264 S-QMQSR 269
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 26.2 bits (55), Expect = 7.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 30 AMSPARWKIFPPSFKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSR 89
A SP R + P S +S Q +HS+P+S + + SR + ASS
Sbjct: 307 AHSPHREEKRPVSANGHSRPSSSGSQMNHSRPSSSGSKMNHSRPATSGSQMPNSRPASSG 366
Query: 90 SIQAQSR 96
S Q QSR
Sbjct: 367 S-QMQSR 372
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.125 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,954
Number of Sequences: 28952
Number of extensions: 116170
Number of successful extensions: 423
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 19
length of query: 137
length of database: 12,070,560
effective HSP length: 74
effective length of query: 63
effective length of database: 9,928,112
effective search space: 625471056
effective search space used: 625471056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -