GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002049-TA|BGIBMGA002049-PA|undefined
         (137 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   0.75 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   0.75 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   0.75 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   1.3  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    20   9.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   9.2  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 84  YTASSRSIQAQSRLTADFEQH--WRQSRSIQAQFRLTANFEQHWHLQANLSTDNDN 137
           Y   +R I+  S L  +  Q   W Q+R ++ + R+         + A+LST N N
Sbjct: 277 YLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 332


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 84  YTASSRSIQAQSRLTADFEQH--WRQSRSIQAQFRLTANFEQHWHLQANLSTDNDN 137
           Y   +R I+  S L  +  Q   W Q+R ++ + R+         + A+LST N N
Sbjct: 66  YLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 84  YTASSRSIQAQSRLTADFEQH--WRQSRSIQAQFRLTANFEQHWHLQANLSTDNDN 137
           Y   +R I+  S L  +  Q   W Q+R ++ + R+         + A+LST N N
Sbjct: 66  YLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
          protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 39 FPPSFKPSKLIKASH 53
          +P  F PS+L+ ASH
Sbjct: 27 YPSMFTPSQLLMASH 41


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 85  TASSRSIQAQSRLTADFEQHWRQS 108
           T S+  +Q+Q      F   W+QS
Sbjct: 431 TVSNIEVQSQGSSKNTFNTFWQQS 454


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 73  LTALPGPTARTYTASS 88
           LT  PGP +  YT  S
Sbjct: 117 LTPSPGPPSHPYTVIS 132


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.125    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,418
Number of Sequences: 317
Number of extensions: 1134
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 137
length of database: 114,650
effective HSP length: 51
effective length of query: 86
effective length of database: 98,483
effective search space:  8469538
effective search space used:  8469538
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)