GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002049-TA|BGIBMGA002049-PA|undefined
         (137 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23648-9|AAK95877.1|  466|Caenorhabditis elegans Prion-like-(q/n...    31   0.29 
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    31   0.39 
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    31   0.39 
Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode ast...    28   2.1  
AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    27   4.8  
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.        27   6.3  
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo...    27   6.3  
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo...    27   6.3  
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo...    27   6.3  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>L23648-9|AAK95877.1|  466|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 38
           protein.
          Length = 466

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 40  PPSFKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRLTA 99
           PP   P+  + A H  S+   PA   QQ H S+L  L  PT  TY+ ++    A ++  A
Sbjct: 122 PPMHHPTTSLLAQHLSSAPLPPAPPQQQSHLSQL--LQQPT--TYSTATNPHAAPTQTIA 177

Query: 100 DFEQHWRQSRSIQAQFRLTANFEQ 123
               +  ++  +Q Q  L A  +Q
Sbjct: 178 RRPDNEARNAQLQEQ-ELAARQQQ 200


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 16   YKFRTTTFGPSVYRAMSPARWKIFPPSFKP-SKLIKASHRQSSHSKPASQPQQDHRSRLT 74
            Y   + T+ P+  R  S  ++    P++ P S     S  Q S + P   P    +   +
Sbjct: 1758 YTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTS 1817

Query: 75   ALPGPTARTYTASS 88
            A   PT+ TY+ SS
Sbjct: 1818 AQYSPTSPTYSPSS 1831


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 16   YKFRTTTFGPSVYRAMSPARWKIFPPSFKP-SKLIKASHRQSSHSKPASQPQQDHRSRLT 74
            Y   + T+ P+  R  S  ++    P++ P S     S  Q S + P   P    +   +
Sbjct: 1765 YTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTS 1824

Query: 75   ALPGPTARTYTASS 88
            A   PT+ TY+ SS
Sbjct: 1825 AQYSPTSPTYSPSS 1838


>Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical
           protein B0464.9 protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 58  HSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRLTADFEQHWRQSRSIQAQF 115
           HS+P+S P  + ++    L   TAR  TA+  S+ +Q R  ++ E  WR   +   Q+
Sbjct: 208 HSRPSSFPSIE-KAIHWCLSSGTARNPTAARVSMPSQIREVSEHEYTWRIDLTTTEQY 264


>AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode
           astacin protease protein32 protein.
          Length = 651

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 71  SRLTALPGPTARTYTASSRSIQAQSRLTADFEQHWRQSR-SIQAQFRLTANF 121
           S LTA       TYT  + S  A +R +A +  HW Q+    Q QFR+ + +
Sbjct: 436 STLTATDTWQQETYTFGNASNSATARPSAVYCNHWIQAPVGKQIQFRIDSTY 487


>AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical
           protein M04G7.2 protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 63  SQPQQDHR-----SRLTALPGPTARTYTASSRSIQAQSRLTADFEQHWRQSRSIQAQFRL 117
           SQ + DH        L  L G T   Y+ ++++   + +LTAD     R S+S++     
Sbjct: 170 SQQKADHHLIRTTRSLIGLDGETEAVYSKATKASPDKGKLTADSPSSRRTSKSLEENSSE 229

Query: 118 TAN 120
           T N
Sbjct: 230 TTN 232


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 42  SFKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRLTADF 101
           S++PS+   AS          SQP   + S+ +  P   A T  A+S +  A  +    +
Sbjct: 223 SYQPSQQSSASSSNLQFHSYNSQPGIQYGSQDSFYPNQAALTAAATSFATSAAQQYAQTY 282

Query: 102 EQHWRQSRSIQA 113
            Q  +Q + +QA
Sbjct: 283 SQQ-QQQQQVQA 293


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 26  SVYRAMSPARWKIFPPSFKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYT 85
           S  R+ SP R     PS  P +  + S  +    +PA  P++  +  L  L   T   Y 
Sbjct: 106 SPVRSRSPRRSSARSPSRSPRRRRERSSERKQSEEPAPLPEKKKKEPLDILRTRTGGAYI 165

Query: 86  ASSRSIQAQSRLT-ADFEQHWRQS 108
             ++    Q +++    EQ+ R +
Sbjct: 166 PPAKLRLMQQQISDKQSEQYQRMN 189


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 40  PPSFKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQ 94
           PP  +P     +  R+   + P+ +P+   R+  + +P P  R  +   R+++A+
Sbjct: 155 PPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRLNSHDRRALRAR 209


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 26  SVYRAMSPARWKIFPPSFKPSKLIKASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYT 85
           S  R+ SP R     PS  P +  + S  +    +PA  P++  +  L  L   T   Y 
Sbjct: 106 SPVRSRSPRRSSARSPSRSPRRRRERSSERKQSEEPAPLPEKKKKEPLDILRTRTGGAYI 165

Query: 86  ASSRSIQAQSRLT-ADFEQHWRQS 108
             ++    Q +++    EQ+ R +
Sbjct: 166 PPAKLRLMQQQISDKQSEQYQRMN 189


>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
          Length = 1379

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 51  ASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRS 90
           +S ++ S S+P S  Q+++RS +  +  PT    +AS+ S
Sbjct: 896 SSTQKRSKSQPRSSSQRNYRSPMKLVDLPTTAAASASTNS 935


>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform c protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 51  ASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRS 90
           +S ++ S S+P S  Q+++RS +  +  PT    +AS+ S
Sbjct: 860 SSTQKRSKSQPRSSSQRNYRSPMKLVDLPTTAAASASTNS 899


>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform a protein.
          Length = 1376

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 51  ASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRS 90
           +S ++ S S+P S  Q+++RS +  +  PT    +AS+ S
Sbjct: 896 SSTQKRSKSQPRSSSQRNYRSPMKLVDLPTTAAASASTNS 935


>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform b protein.
          Length = 1379

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 51  ASHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRS 90
           +S ++ S S+P S  Q+++RS +  +  PT    +AS+ S
Sbjct: 896 SSTQKRSKSQPRSSSQRNYRSPMKLVDLPTTAAASASTNS 935


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 40   PPSFKPSKLIKASHRQSSHSKPASQPQQDHRSR 72
            PP  +P K IK S ++  ++ P  +P+Q   S+
Sbjct: 1335 PPPTEPEKPIKPSEQKKPNAIPVERPKQPTPSK 1367


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.125    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,271
Number of Sequences: 27539
Number of extensions: 127152
Number of successful extensions: 402
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 24
length of query: 137
length of database: 12,573,161
effective HSP length: 74
effective length of query: 63
effective length of database: 10,535,275
effective search space: 663722325
effective search space used: 663722325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)