GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002049-TA|BGIBMGA002049-PA|undefined
         (137 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.072
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 0.072
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 42  SFKPSKLIKA-SHRQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRLTAD 100
           ++KP K  +A   + S+ ++PA   Q         L  P AR+ ++ +++ Q     +  
Sbjct: 640 AYKPHKKFRALRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSSQAQASQCPQTASLL 699

Query: 101 FEQHWRQSRSIQAQFRLTA 119
              H   +RS+    R+TA
Sbjct: 700 SSTHSTLARSLMEGPRMTA 718


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 88  SRSIQAQSRLTADFEQHWRQSR 109
           +R+ +  S L +D EQH+RQ R
Sbjct: 711 TRNSEMFSSLLSDTEQHFRQHR 732


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 51 ASHRQSSHSKPASQPQQDH 69
          +S R  S S   SQP QDH
Sbjct: 39 SSSRSPSPSLLTSQPHQDH 57


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 120 NFEQHWHLQANLSTDN 135
           NF+++ ++Q N+S DN
Sbjct: 175 NFDKYDNIQVNVSGDN 190


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 79  PTARTYTASSRSIQAQSRLTADFEQHWRQSRSIQAQFRLTANFEQHWH 126
           P A T   +S     + R+      H+  S + Q+  RLT+  E H H
Sbjct: 53  PGAITGLVASLDGALKLRIRCSDVHHFESSFNAQSWQRLTSLHELHVH 100


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 29  RAMSPARWKIFPPSFKPSKLIKASHR 54
           RA+ P  WK+ P + +  +  +   R
Sbjct: 578 RALWPTEWKVRPSTVEEREEFRRQER 603


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.125    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,699
Number of Sequences: 429
Number of extensions: 1272
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 137
length of database: 140,377
effective HSP length: 52
effective length of query: 85
effective length of database: 118,069
effective search space: 10035865
effective search space used: 10035865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)