Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002048-TA|BGIBMGA002048-PA|undefined
         (61 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   0.50 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    18   8.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    18   8.2  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 0.50
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 16  RAATQHIVPWRGKW---SPEAVVVRTGRGAQRRLAGPLLDG-CAC 56
           R  T  ++ W+ KW   +  A  +R    AQRR  G   +G C C
Sbjct: 60  RRVTCDVLSWQSKWLSINHSACAIRC--LAQRRKGGSCRNGVCIC 102


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 3   LFNDFSGDYWKTTRAATQHIVPWRGKWSPEAV 34
           L+N+  G++  T           R +W P A+
Sbjct: 113 LYNNADGNFEVTLATKATLNYTGRVEWKPPAI 144


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
          protein.
          Length = 587

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 14 TTRAATQHIVPWRGKWSPEAVVV 36
          T  AA    V W G W    ++V
Sbjct: 49 TACAALYERVEWSGPWILVTLIV 71


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.138    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,870
Number of Sequences: 429
Number of extensions: 478
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 61
length of database: 140,377
effective HSP length: 41
effective length of query: 20
effective length of database: 122,788
effective search space:  2455760
effective search space used:  2455760
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.2 bits)
S2: 35 (18.2 bits)