GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002048-TA|BGIBMGA002048-PA|undefined
         (61 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2WIF5 Cluster: Hemolysin activation/secretion protein;...    33   0.84 
UniRef50_A1FTX1 Cluster: Periplasmic sensor signal transduction ...    31   4.5  
UniRef50_UPI00003AF7B4 Cluster: UPI00003AF7B4 related cluster; n...    30   7.8  
UniRef50_Q607W3 Cluster: Putative nodulation protein nolNO; n=1;...    30   7.8  

>UniRef50_A2WIF5 Cluster: Hemolysin activation/secretion protein;
           n=2; Burkholderia dolosa AUO158|Rep: Hemolysin
           activation/secretion protein - Burkholderia dolosa
           AUO158
          Length = 581

 Score = 33.5 bits (73), Expect = 0.84
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 25  WRGKWSPEAVVVRT-GRGAQRRLAGPLLDGCACWWRSY 61
           W G+W+  A V RT GR     LAG   DG    WR++
Sbjct: 537 WSGRWNAHAAVARTIGRNDGASLAGNNADGLNTSWRAW 574


>UniRef50_A1FTX1 Cluster: Periplasmic sensor signal transduction
           histidine kinase precursor; n=1; Stenotrophomonas
           maltophilia R551-3|Rep: Periplasmic sensor signal
           transduction histidine kinase precursor -
           Stenotrophomonas maltophilia R551-3
          Length = 439

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 7   FSGDYWKTTRAATQHIVPWRGKWSPEAVVVRTGRGAQRRLAGPL 50
           FSG YW+   A  + ++  R  W  E + V  G  A R L+GPL
Sbjct: 80  FSGAYWQIGGADGRVLLQSRSLWD-ETLPVTAGGPATRNLSGPL 122


>UniRef50_UPI00003AF7B4 Cluster: UPI00003AF7B4 related cluster; n=1;
           Gallus gallus|Rep: UPI00003AF7B4 UniRef100 entry -
           Gallus gallus
          Length = 121

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 9/49 (18%)

Query: 17  AATQHIV---PWR--GKWSPEAV--VVRT--GRGAQRRLAGPLLDGCAC 56
           A TQH     PWR  G+ +PEA+   + T  G+G+  R  G +L GC+C
Sbjct: 71  AGTQHPTVPHPWRPQGQDAPEAISCAIWTLRGKGSHPRSEGNMLHGCSC 119


>UniRef50_Q607W3 Cluster: Putative nodulation protein nolNO; n=1;
           Methylococcus capsulatus|Rep: Putative nodulation
           protein nolNO - Methylococcus capsulatus
          Length = 592

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 12  WKTTRAATQHIVPWRGKWSPEAVVVRTGR 40
           W+ TR   +H+  W G  SP  ++   GR
Sbjct: 82  WRATRPLHEHLAHWLGWLSPRGILTNAGR 110


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.325    0.138    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,525,776
Number of Sequences: 1657284
Number of extensions: 2252106
Number of successful extensions: 6737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6735
Number of HSP's gapped (non-prelim): 4
length of query: 61
length of database: 575,637,011
effective HSP length: 41
effective length of query: 20
effective length of database: 507,688,367
effective search space: 10153767340
effective search space used: 10153767340
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 65 (30.3 bits)