GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002048-TA|BGIBMGA002048-PA|undefined
         (61 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073...    28   1.1  
10_05_0107 - 9223680-9223980,9224340-9224715,9225722-9225817,922...    27   1.4  
01_05_0746 + 24856362-24856710,24856799-24856986                       26   3.3  
12_02_1043 - 25646075-25646437,25646655-25647959,25648394-25648648     26   4.4  
07_03_0799 - 21587003-21587040,21588262-21588658                       26   4.4  
12_02_0071 + 13207111-13207280,13208100-13208251,13208728-13208903     25   5.8  
08_01_0086 - 629043-629594                                             25   5.8  

>10_08_1040 +
           22503641-22503681,22503838-22504299,22506952-22507361,
           22507484-22507640,22507718-22507937,22508053-22508106,
           22508193-22508272,22508359-22508636,22509193-22509515,
           22509590-22509853,22510453-22510860
          Length = 898

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 8   SGDYWKTTRAATQHIVPWRGKWSPE-AVVVRTGRGAQRRLAGPLLDGCACWWR 59
           +G +W      T     W+ +W    AV  R GR   R+  G    G A W R
Sbjct: 114 TGQWWLCAATTTGRRCRWQRRWGRRGAVGRRRGRRTARQRPGGDGGGAAAWGR 166


>10_05_0107 -
           9223680-9223980,9224340-9224715,9225722-9225817,
           9225870-9225930
          Length = 277

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 27  GKWSPEAVVVRTGRGAQRRLAGPLLDG 53
           G+W   +V   TGRG  RR  GP L+G
Sbjct: 86  GRWCTASVSSSTGRGGARR--GPALEG 110


>01_05_0746 + 24856362-24856710,24856799-24856986
          Length = 178

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 36 VRTGRGAQRRLAGPLLDGCACWWR 59
          V T R  Q  + G     C CWWR
Sbjct: 42 VATARRGQEGMDGRCGAACPCWWR 65


>12_02_1043 - 25646075-25646437,25646655-25647959,25648394-25648648
          Length = 640

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 23  VPWRGKWSPEAVVVRTGRGAQRRLAGPL 50
           V W   + PE +  R+G    RRLAGPL
Sbjct: 380 VVWHRSY-PEHLAFRSGLARVRRLAGPL 406


>07_03_0799 - 21587003-21587040,21588262-21588658
          Length = 144

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 12 WKTTRAATQHIVPWRGK---WSPEAVVVRTGRGAQRRLAG 48
          W+T  +  + IV WRG+   W  EA  +  GR   R   G
Sbjct: 11 WQTAASGQRGIVWWRGRSPAWRREAQPMEGGRLGARGTGG 50


>12_02_0071 +
          13207111-13207280,13208100-13208251,13208728-13208903
          Length = 165

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 9  GDYWKTTRAATQHIVPWRGKW-SPEAVVVRTGRGAQRR 45
          G  W+      + + PWR  W SPE +  R   G+  R
Sbjct: 40 GGRWRHDSGGLRALSPWRWTWFSPETLAKRRYLGSALR 77


>08_01_0086 - 629043-629594
          Length = 183

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/34 (32%), Positives = 13/34 (38%)

Query: 25  WRGKWSPEAVVVRTGRGAQRRLAGPLLDGCACWW 58
           WRG+     V   +G G       PL  G   WW
Sbjct: 76  WRGEGRRRGVGTASGGGGGAARPAPLRLGVEAWW 109


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.138    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,938
Number of Sequences: 37544
Number of extensions: 67766
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 7
length of query: 61
length of database: 14,793,348
effective HSP length: 41
effective length of query: 20
effective length of database: 13,254,044
effective search space: 265080880
effective search space used: 265080880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)