GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002048-TA|BGIBMGA002048-PA|undefined
         (61 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17)                   25   6.7  

>SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17)
          Length = 745

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 30  SPEAVVVRTGRGAQRRLAGPLLDGCACW 57
           +P++VV++T +G +RR     LD  +C+
Sbjct: 676 TPQSVVIQTPKGLRRRNRRQCLDVLSCF 703


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.138    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,662
Number of Sequences: 59808
Number of extensions: 62124
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 1
length of query: 61
length of database: 16,821,457
effective HSP length: 40
effective length of query: 21
effective length of database: 14,429,137
effective search space: 303011877
effective search space used: 303011877
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)