GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002048-TA|BGIBMGA002048-PA|undefined
         (61 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014146-1|AAH14146.1|  739|Homo sapiens adaptor-related protein...    30   1.3  
AL137856-6|CAI19071.1|  571|Homo sapiens adaptor-related protein...    30   1.3  
AL137856-5|CAI19072.1|  739|Homo sapiens adaptor-related protein...    30   1.3  
AF092094-1|AAD20448.1|  739|Homo sapiens AP-4 adaptor complex be...    30   1.3  
AB209817-1|BAD93054.1|  771|Homo sapiens adaptor-related protein...    30   1.3  

>BC014146-1|AAH14146.1|  739|Homo sapiens adaptor-related protein
           complex 4, beta 1 subunit protein.
          Length = 739

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 6   DFSGDYWKTTRAATQHIVPWRGKWSPEAV 34
           D+    W + + A Q ++PWRG++ P+ +
Sbjct: 629 DYFEKTWLSLKVAHQQVLPWRGEFHPDTL 657


>AL137856-6|CAI19071.1|  571|Homo sapiens adaptor-related protein
           complex 4, beta 1 subunit protein.
          Length = 571

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 6   DFSGDYWKTTRAATQHIVPWRGKWSPEAV 34
           D+    W + + A Q ++PWRG++ P+ +
Sbjct: 461 DYFEKTWLSLKVAHQQVLPWRGEFHPDTL 489


>AL137856-5|CAI19072.1|  739|Homo sapiens adaptor-related protein
           complex 4, beta 1 subunit protein.
          Length = 739

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 6   DFSGDYWKTTRAATQHIVPWRGKWSPEAV 34
           D+    W + + A Q ++PWRG++ P+ +
Sbjct: 629 DYFEKTWLSLKVAHQQVLPWRGEFHPDTL 657


>AF092094-1|AAD20448.1|  739|Homo sapiens AP-4 adaptor complex beta4
           subunit protein.
          Length = 739

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 6   DFSGDYWKTTRAATQHIVPWRGKWSPEAV 34
           D+    W + + A Q ++PWRG++ P+ +
Sbjct: 629 DYFEKTWLSLKVAHQQVLPWRGEFHPDTL 657


>AB209817-1|BAD93054.1|  771|Homo sapiens adaptor-related protein
           complex 4, beta 1 subunit variant protein.
          Length = 771

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 6   DFSGDYWKTTRAATQHIVPWRGKWSPEAV 34
           D+    W + + A Q ++PWRG++ P+ +
Sbjct: 661 DYFEKTWLSLKVAHQQVLPWRGEFHPDTL 689


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.325    0.138    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,992,739
Number of Sequences: 224733
Number of extensions: 289399
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 5
length of query: 61
length of database: 73,234,838
effective HSP length: 41
effective length of query: 20
effective length of database: 64,020,785
effective search space: 1280415700
effective search space used: 1280415700
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)