GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002048-TA|BGIBMGA002048-PA|undefined
         (61 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100656-8|AAF99965.1|  210|Caenorhabditis elegans Hypothetical ...    27   1.6  
Z81539-6|CAB63201.2|  236|Caenorhabditis elegans Hypothetical pr...    25   4.8  
Z81539-3|CAB04391.1|  218|Caenorhabditis elegans Hypothetical pr...    25   4.8  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    25   8.3  

>AF100656-8|AAF99965.1|  210|Caenorhabditis elegans Hypothetical
           protein F49F1.9 protein.
          Length = 210

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 9   GDYWKTTRAATQHIVPWRGKWS 30
           G YW T +    + VP RG+WS
Sbjct: 88  GGYWATGKVLRFYGVPGRGRWS 109


>Z81539-6|CAB63201.2|  236|Caenorhabditis elegans Hypothetical
           protein F46A8.8 protein.
          Length = 236

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 9   GDYWKTTRAATQHIVPWRGKWS 30
           G YW T +    + VP +G+WS
Sbjct: 114 GGYWDTGKVLRFYGVPGQGRWS 135


>Z81539-3|CAB04391.1|  218|Caenorhabditis elegans Hypothetical
           protein F46A8.5 protein.
          Length = 218

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 9   GDYWKTTRAATQHIVPWRGKWS 30
           G YW T +    + VP +G+WS
Sbjct: 96  GGYWDTGKVLRFYGVPGQGRWS 117


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 3   LFNDFSGDYWKTTRAATQHIVP 24
           L+  F G +WKT    T  +VP
Sbjct: 413 LYKTFEGIHWKTNLVMTAFLVP 434


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.138    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,492
Number of Sequences: 27539
Number of extensions: 42336
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 4
length of query: 61
length of database: 12,573,161
effective HSP length: 42
effective length of query: 19
effective length of database: 11,416,523
effective search space: 216913937
effective search space used: 216913937
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)