Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002047-TA|BGIBMGA002047-PA|IPR007087|Zinc finger,
C2H2-type
(234 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 65 4e-11
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 64 9e-11
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 64 9e-11
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 62 3e-10
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 61 9e-10
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 58 8e-09
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 57 1e-08
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 44 1e-04
01_06_1412 - 37140654-37141088,37141549-37142214 37 0.016
05_05_0022 + 21592403-21593083,21593720-21594208 34 0.086
09_04_0564 + 18565583-18566449,18569662-18570123 33 0.20
09_02_0366 + 7941550-7942161,7942230-7942775 33 0.20
08_02_1172 + 24898290-24899141,24900864-24901328 33 0.20
06_03_0743 + 24069752-24070483,24071890-24072345 33 0.20
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393 31 0.80
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 31 1.1
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 30 1.4
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 30 1.9
01_01_0990 + 7847066-7847478,7847713-7848679 30 1.9
02_04_0316 - 21978330-21979397 29 2.4
08_02_1602 - 28148255-28149413,28151927-28152087 29 3.2
09_02_0226 - 6007656-6008063,6012166-6012678 28 7.5
01_06_1614 - 38648495-38649706 28 7.5
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFR 212
C SC K ++ +LK H+ H E+P+KC W+GC F T H R HTG +P++
Sbjct: 819 CTDESCGKRFSSHKYLKRHQCVHRDERPFKCPWDGCPMTFKWLWAQTEHIRVHTGERPYK 878
Query: 213 CR--HCDRCFSRSDHLALHAKR 232
C C + F + H K+
Sbjct: 879 CSAPDCGQSFRYVSDYSRHRKK 900
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 64.1 bits (149), Expect = 9e-11
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFR 212
C + +C K + + L+ H H E+ Y C GC +F S +L RH+ HTG K F
Sbjct: 89 CSYENCGKTFVDVAALRKHAHVHN-ERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDFI 147
Query: 213 CRH--CDRCFSRSDHLALHAKRHA 234
C H C + FS +L H K HA
Sbjct: 148 CPHPGCGKAFSLDFNLRSHLKTHA 171
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFR 212
C+ P C K + SS LK H HTG+K + C GC F+ L H + H
Sbjct: 118 CQEPGCGKKFVDSSKLKRHHLIHTGQKDFICPHPGCGKAFSLDFNLRSHLKTHALENYHV 177
Query: 213 CRH--CDRCFSRSDHLALHAKRH 233
C C + F+ L H K H
Sbjct: 178 CPFPACGKRFTSDSKLKSHVKGH 200
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 174 THTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRCRHCDRCFSRSDHLALHAKRH 233
T E+PY C ++GC + S +L H + +H + + +A HA H
Sbjct: 254 TSFAERPYVCPYDGCGKAYIHSYKLNLH---------LKTQHPEHGQEENGRIAAHASEH 304
Query: 234 A 234
A
Sbjct: 305 A 305
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 64.1 bits (149), Expect = 9e-11
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFR 212
C + C K + + L+ H H GE+ Y C + GC+ +F S +L RH+ HTG K F
Sbjct: 45 CSYEGCGKTFVDAGALRKHAHVH-GERQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNFV 103
Query: 213 CRH--CDR--CFSRSDHLALHAKRHA 234
C H C + FS +L H K H+
Sbjct: 104 CPHEGCGKVLAFSLDFNLKAHMKTHS 129
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 153 CEFPSCDKV--YTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRK 204
C C KV ++ +LKAH +TH+ + + C + C RF + +L H ++
Sbjct: 104 CPHEGCGKVLAFSLDFNLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAHIKQ 157
Score = 35.1 bits (77), Expect = 0.049
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 164 KSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRCRH--CDRCFS 221
K + K T E + CS+EGC F + L +H H G + + C + CD+ F
Sbjct: 26 KEQEAELAKPEPTTEVLFLCSYEGCGKTFVDAGALRKHAHVH-GERQYVCHYAGCDKKFL 84
Query: 222 RSDHLALHAKRH 233
S L H H
Sbjct: 85 DSSKLKRHFLIH 96
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 174 THTGEKPYKCSWEGCEWRFARSDELTRHYRK 204
T + ++PY C ++GC + +L H +K
Sbjct: 195 TPSADRPYVCPYDGCAKAYIHEYKLNLHLKK 225
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 62.5 bits (145), Expect = 3e-10
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFR 212
C SC + + +L+ H+ H + PYKC WEGC F S + H++ H G +P++
Sbjct: 565 CTVKSCGRHFRSHKYLRRHQSIHNDDMPYKCPWEGCSMAFKWSWDRGEHFQVHAGKRPYK 624
Query: 213 CR--HCDRCFSRSDHLALHAKR 232
C C + + H +R
Sbjct: 625 CTTPGCSKIYKFVSDFTRHKRR 646
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFR 212
CE C + + L HK+ C+ + C F L RH H P++
Sbjct: 542 CEIDYCRMTFKNRAELSVHKKN-------TCTVKSCGRHFRSHKYLRRHQSIHNDDMPYK 594
Query: 213 C--RHCDRCF----SRSDHLALHA 230
C C F R +H +HA
Sbjct: 595 CPWEGCSMAFKWSWDRGEHFQVHA 618
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 60.9 bits (141), Expect = 9e-10
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFR 212
C C K + +L H++ H E+P KC+W+GC+ F T H R HTG +P+
Sbjct: 1255 CPVKGCKKKFFCHKYLLQHRKVHIDERPLKCTWKGCKKAFKWPWARTEHMRVHTGVRPYE 1314
Query: 213 CRH--CDRCFSRSDHLALHAKR 232
C+ C + F + H ++
Sbjct: 1315 CQEPGCGQTFRFVSDFSRHKRK 1336
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 57.6 bits (133), Expect = 8e-09
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFR 212
C C K + +L H++ HT ++P C W+GC F T H R HTG +P+
Sbjct: 1111 CPVKGCGKKFFSHKYLLQHRKVHTDDRPLTCPWKGCNMAFKWPWARTEHLRVHTGDRPYV 1170
Query: 213 CRH--CDRCFSRSDHLALHAKR 232
C C + F + H ++
Sbjct: 1171 CHEPGCAQTFRFVSDFSRHKRK 1192
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFR 212
C+ C + L HK C +GC +F L +H + HT +P
Sbjct: 1088 CDIEGCSMSFRTKRDLSLHKSDI-------CPVKGCGKKFFSHKYLLQHRKVHTDDRPLT 1140
Query: 213 C--RHCDRCF----SRSDHLALH 229
C + C+ F +R++HL +H
Sbjct: 1141 CPWKGCNMAFKWPWARTEHLRVH 1163
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 158 CDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRCR--H 215
C + K +HLK H ++H+ E+ + C E C + + R D L RH KH G K F C
Sbjct: 65 CGASFQKPAHLKQHMQSHSDERSFICPLEDCPFSYIRKDHLNRHMLKHQG-KLFTCSMDG 123
Query: 216 CDRCFSRSDHLALHAK 231
C R FS ++ H K
Sbjct: 124 CGRKFSIKANMQRHVK 139
Score = 50.8 bits (116), Expect = 9e-07
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 167 HLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYR-KHTGAKPFRCRH--CDRCF 220
HL+AH+ + E+ KCS+EGCE F+ LT+H + H KPF CR C++ F
Sbjct: 231 HLRAHEEVPSTER-IKCSFEGCECSFSNKSNLTKHIKASHDQVKPFACRFTGCEKVF 286
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRK----HTGA 208
C C Y + HL H H G K + CS +GC +F+ + RH ++ T
Sbjct: 90 CPLEDCPFSYIRKDHLNRHMLKHQG-KLFTCSMDGCGRKFSIKANMQRHVKEIHEDETAT 148
Query: 209 K---PFRCRH--CDRCFSRSDHLALHAKRH 233
K F C+ C++ F + + H + H
Sbjct: 149 KSNRQFVCKEEGCNKVFKYASKMKKHEESH 178
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 153 CEFPSCDKVYTKSSHLKAH-KRTHTGEKPYKCSWEGCE 189
C F C+ ++ S+L H K +H KP+ C + GCE
Sbjct: 246 CSFEGCECSFSNKSNLTKHIKASHDQVKPFACRFTGCE 283
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHT--GEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKP 210
C+ C+KV+ +S +K H+ +H C GC F + L R H A
Sbjct: 156 CKEEGCNKVFKYASKMKKHEESHVKLDYVEVVCCEPGCMKTFTNVECL----RAHNQA-C 210
Query: 211 FRCRHCDRCFSRSDHLALHAKRH 233
+ CD C + HL + KRH
Sbjct: 211 HQYVQCDICGEK--HLKKNIKRH 231
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRK-HTGAKP- 210
C C Y++ HL H TH G K + C EGC +F + RH ++ H P
Sbjct: 289 CHVDGCPFSYSRKDHLNRHLLTHQG-KLFACPMEGCNRKFTIKGNIQRHVQEMHKDGSPC 347
Query: 211 -----FRC--RHCDRCFSRSDHLALHAKRH 233
F C +C + F + L H + H
Sbjct: 348 ESKKEFICPEENCGKTFKYASKLQKHEESH 377
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 178 EKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRC--RHCDRCFSRSDHLALHAK 231
++P+ C +GC + ++R D L RH H G K F C C+R F+ ++ H +
Sbjct: 284 QRPFSCHVDGCPFSYSRKDHLNRHLLTHQG-KLFACPMEGCNRKFTIKGNIQRHVQ 338
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 153 CEFPSCDKVYTKSSHLKAH-KRTHTGEKPYKCSWEGCEWRFA 193
C C ++K S+L H K H ++P+ C + GC F+
Sbjct: 445 CHLKDCKLSFSKKSNLDKHVKAVHEQKRPFVCGFSGCGKSFS 486
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGA---K 209
CE P C K +T LKAH + + + C + C + + + RH R H G+ +
Sbjct: 388 CE-PGCMKAFTNLECLKAHNK--SCHRHVVC--DVCGTKQLKKN-FKRHQRMHEGSCVTE 441
Query: 210 PFRC--RHCDRCFSRSDHLALHAK 231
RC + C FS+ +L H K
Sbjct: 442 RVRCHLKDCKLSFSKKSNLDKHVK 465
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 198 LTRHYRKHTGAKPFRCRHCDRCFSRSDHLALHAK 231
L HY++ GAKPFRCR C + F+ H K
Sbjct: 277 LQTHYKRKHGAKPFRCRRCAKPFAVKGDWRTHEK 310
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 34.3 bits (75), Expect = 0.086
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 198 LTRHYRKHTGAKPFRCRHCDRCFSRSDHLALHAK 231
L HY++ GAKPF CR C + F+ H K
Sbjct: 285 LQTHYKRKHGAKPFACRRCAKPFAVKGDWRTHEK 318
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 198 LTRHYRKHTGAKPFRCRHCDRCFSRSDHLALHAK 231
L HY++ G KPF CR C + F+ H K
Sbjct: 344 LQTHYKRKHGLKPFLCRKCGKAFAVKGDWRTHEK 377
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 198 LTRHYRKHTGAKPFRCRHCDRCFSRSDHLALHAK 231
L HYR+ GA+P+ CR C + F+ H K
Sbjct: 266 LQTHYRRKHGARPYACRRCGKRFAVRGDWRTHEK 299
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 198 LTRHYRKHTGAKPFRCRHCDRCFSRSDHLALHAK 231
L HY++ G KPF CR C + F+ H K
Sbjct: 339 LQTHYKRKHGLKPFLCRKCGKAFAVKGDWRTHEK 372
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 198 LTRHYRKHTGAKPFRCRHCDRCFSRSDHLALHAK 231
L HY++ G KPF CR C + F+ H K
Sbjct: 299 LQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEK 332
>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
Length = 322
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 198 LTRHYRKHTGAKPFRCRHCDRCFSRSDHLALHAK 231
L HYR+ GA+ F CR C + F+ H K
Sbjct: 235 LQTHYRRRHGARDFACRRCAKRFAVRGDWRTHEK 268
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 158 CDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGA 208
C K Y + LKAH +T G + Y+C C F R D H R GA
Sbjct: 142 CGKRYAVQADLKAHTKT-CGTREYRCD---CGTLFTRRDSFVTH-RAFCGA 187
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 158 CDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRH 201
C K Y S KAH +T G + Y+C C F+R D H
Sbjct: 129 CSKKYAVQSDWKAHTKT-CGSREYRCD---CGTLFSRRDSFITH 168
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 158 CDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRH 201
C K Y S KAH +T G + Y+C C F+R D H
Sbjct: 129 CSKRYAVQSDWKAHSKT-CGTREYRCD---CGTLFSRRDSFITH 168
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 158 CDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRH 201
C K Y S KAH +T G + Y+C C F+R D H
Sbjct: 106 CSKRYAVQSDWKAHSKT-CGTREYRCD---CGTLFSRRDSFITH 145
>02_04_0316 - 21978330-21979397
Length = 355
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 172 KRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAK-PFRCRHCDRCFSRSDHLALH 229
+R+H K Y C G + RFA +L H R H G + +RC C FSR D L H
Sbjct: 222 RRSHC-PKLYACERCGGKKRFAVLADLRSHLR-HCGEEAQWRC-SCGTTFSRKDKLFGH 277
>08_02_1602 - 28148255-28149413,28151927-28152087
Length = 439
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 179 KPYKCSWEGCEW--RFARSDEL------TRHYRKHTGAKPFRCRHCDR-CFSRSDHLALH 229
+ Y C EGC W R A+ L HY++ K + C C R FS L H
Sbjct: 310 RKYSCPQEGCRWNRRHAKFQPLKSVICAKNHYKRSHCPKMYVCNRCGRKHFSVLSDLRTH 369
Query: 230 AK 231
K
Sbjct: 370 EK 371
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 198 LTRHYRKHTGAKPFRCRHCDR 218
L HY++ AKPF CR C +
Sbjct: 226 LQTHYKRKHCAKPFACRKCGK 246
>01_06_1614 - 38648495-38649706
Length = 403
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 169 KAHKRTHTGEK-PYKCSWEGCEWRFARSDELTRHYRKH--------------TGAKP--- 210
+A + + G+ PY+CS+ GC+ + L H H +GA+P
Sbjct: 232 RARPKRNAGQGGPYRCSYPGCKGEYRTHQGLGGHVAGHINREKQAAAAAQGGSGARPEGN 291
Query: 211 FRCRHCDRCFSRSDHLALHAKRH 233
C+ C + FS L H ++H
Sbjct: 292 HPCKTCGKEFSTGVALGGHMRKH 314
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.132 0.438
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,171,857
Number of Sequences: 37544
Number of extensions: 115887
Number of successful extensions: 422
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 65
length of query: 234
length of database: 14,793,348
effective HSP length: 80
effective length of query: 154
effective length of database: 11,789,828
effective search space: 1815633512
effective search space used: 1815633512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -