GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002047-TA|BGIBMGA002047-PA|IPR007087|Zinc finger,
C2H2-type
         (234 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    75   4e-16
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    73   2e-15
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    61   1e-11
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    50   2e-08
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 75.4 bits (177), Expect = 4e-16
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFR 212
           CE+  C K ++   +L  H+R HT E+PYKC  + CE  F  S +L RH R HTG +P +
Sbjct: 122 CEY--CSKSFSVKENLSVHRRIHTKERPYKC--DVCERAFEHSGKLHRHMRIHTGERPHK 177

Query: 213 CRHCDRCFSRSDHLALHAKRH 233
           C  C + F +S  L +H + H
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTH 198



 Score = 71.3 bits (167), Expect = 7e-15
 Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 4/78 (5%)

Query: 158 CDKVYTKSSHLKAHKRTH--TGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRCRH 215
           C K + + +  ++H R+H   GE PY+C+   C   FA    LTRHYR HTG KP++C +
Sbjct: 67  CQKAFDQKNLYQSHLRSHGKEGEDPYRCNI--CGKTFAVPARLTRHYRTHTGEKPYQCEY 124

Query: 216 CDRCFSRSDHLALHAKRH 233
           C + FS  ++L++H + H
Sbjct: 125 CSKSFSVKENLSVHRRIH 142



 Score = 70.9 bits (166), Expect = 9e-15
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 158 CDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRCRHCD 217
           C++ +  S  L  H R HTGE+P+KC+   C   F +S +L  H R HTG KP+ C+ C 
Sbjct: 153 CERAFEHSGKLHRHMRIHTGERPHKCTV--CSKTFIQSGQLVIHMRTHTGEKPYVCKACG 210

Query: 218 RCFSRSDHLALHAKRH 233
           + F+ S  L +H + H
Sbjct: 211 KGFTCSKQLKVHTRTH 226



 Score = 69.3 bits (162), Expect = 3e-14
 Identities = 33/76 (43%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 158 CDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRCRHCD 217
           C K + +S  L  H RTHTGEKPY C  + C   F  S +L  H R HTG KP+ C  C 
Sbjct: 181 CSKTFIQSGQLVIHMRTHTGEKPYVC--KACGKGFTCSKQLKVHTRTHTGEKPYTCDICG 238

Query: 218 RCFSRSDHLALHAKRH 233
           + F  +  L LH   H
Sbjct: 239 KSFGYNHVLKLHQVAH 254



 Score = 64.1 bits (149), Expect = 1e-12
 Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 157 SCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRCRHC 216
           +C K +T S  LK H RTHTGEKPY C  + C   F  +  L  H   H G K ++C  C
Sbjct: 208 ACGKGFTCSKQLKVHTRTHTGEKPYTC--DICGKSFGYNHVLKLHQVAHYGEKVYKCTLC 265

Query: 217 DRCFSRSDHLALHAKRHA 234
              F     + LH K H+
Sbjct: 266 HETFGSKKTMELHIKTHS 283


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 72.9 bits (171), Expect = 2e-15
 Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 154 EFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRC 213
           E P C K +T+  HLK H R HTGEKPY CS   C+ +F +   L RH R HTG +P+ C
Sbjct: 11  ECPECHKRFTRDHHLKTHMRLHTGEKPYHCS--HCDRQFVQVANLRRHLRVHTGERPYAC 68

Query: 214 RHC 216
             C
Sbjct: 69  ELC 71



 Score = 68.5 bits (160), Expect = 5e-14
 Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 172 KRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRCRHCDRCFSRSDHLALHAK 231
           +RTHTGEKP++C    C  RF R   L  H R HTG KP+ C HCDR F +  +L  H +
Sbjct: 1   ERTHTGEKPFECP--ECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLR 58

Query: 232 RH 233
            H
Sbjct: 59  VH 60


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 60.9 bits (141), Expect = 1e-11
 Identities = 31/64 (48%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 158 CDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRCRHCD 217
           C+KVY     LK H RTHT   P KC    C   F+R   L  H R HTG KPF C+HC+
Sbjct: 22  CEKVYVSLGALKMHIRTHT--LPCKCHL--CGKAFSRPWLLQGHIRTHTGEKPFSCQHCN 77

Query: 218 RCFS 221
           R F+
Sbjct: 78  RAFA 81



 Score = 38.7 bits (86), Expect = 5e-05
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFA 193
           C+   C K +++   L+ H RTHTGEKP+ C  + C   FA
Sbjct: 43  CKCHLCGKAFSRPWLLQGHIRTHTGEKPFSC--QHCNRAFA 81



 Score = 32.3 bits (70), Expect = 0.004
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 167 HLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRCRHCDRCFSRSDHL 226
           H + H     G+     S + CE  +     L  H R HT   P +C  C + FSR   L
Sbjct: 1   HQQFHCAAAEGQAKKSFSCKYCEKVYVSLGALKMHIRTHT--LPCKCHLCGKAFSRPWLL 58

Query: 227 ALHAKRH 233
             H + H
Sbjct: 59  QGHIRTH 65


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 167 HLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFRCRHCDRCFSRSDHL 226
           HL+ H R H G KP+KC  E C +       L  H + H+    +RC +C         L
Sbjct: 3   HLEYHLRNHFGSKPFKC--EKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSL 60

Query: 227 ALHAKRHA 234
            LH ++++
Sbjct: 61  KLHLRKYS 68



 Score = 25.4 bits (53), Expect = 0.45
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 153 CEFPSCDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHT 206
           CE   C       S L +H ++H+    Y+C+   C +       L  H RK++
Sbjct: 19  CE--KCSYSCVNKSMLNSHLKSHSNVYQYRCA--NCTYATKYCHSLKLHLRKYS 68


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 158 CDKVYTKSSHLKAHKRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKP 210
           C KV    + LK H      E+  +     CE  +   + L  H   +  ++P
Sbjct: 11  CGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRP 63


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.132    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,799
Number of Sequences: 429
Number of extensions: 1347
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 15
length of query: 234
length of database: 140,377
effective HSP length: 56
effective length of query: 178
effective length of database: 116,353
effective search space: 20710834
effective search space used: 20710834
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 42 (21.0 bits)