GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002046-TA|BGIBMGA002046-PA|undefined
         (73 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56185| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.71 
SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)              27   2.9  
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  
SB_4319| Best HMM Match : Na_H_Exchanger (HMM E-Value=0.0059)          25   6.7  
SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  

>SB_56185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 14/22 (63%), Positives = 14/22 (63%)

Query: 13 LQDVTDTGYFEWKLSLEDYWQQ 34
          LQ V DTGYF    SLED W Q
Sbjct: 2  LQTVHDTGYFYSLPSLEDDWAQ 23


>SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)
          Length = 735

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 21  YFEWKLSLEDYWQQPLVIALMRESRKILFSHEIYKYPKVYHDIS 64
           +FE + + EDY Q   VI L+ + + ++F+ ++ K  KV   I+
Sbjct: 321 FFELETA-EDYMQAVAVIILIIKRKLVIFNPQVIKLTKVNKTIT 363


>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4634

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 19  TGYFEWKLSLEDYWQQPLVIALMRESRKILFSHEIYKYPKVYHDIS 64
           TG FE+ L+  +   Q         SR I    E++ Y ++YH +S
Sbjct: 271 TGLFEFSLASRNKTSQEGASVSFAVSRSIAQHGEVHVYWQIYHVLS 316


>SB_4319| Best HMM Match : Na_H_Exchanger (HMM E-Value=0.0059)
          Length = 410

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 2   DVLPSGNLFRELQDVTDTGYFEWKLSLEDYWQQPLVIALM 41
           D+LP GN+F     +    +F   + L  Y Q P ++ ++
Sbjct: 82  DLLPGGNIFAIFVVIICASFFGMLVKLVPYLQLPPLLGML 121


>SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 851

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 51  HEIYKYPKVYHDISWW 66
           H +  YP  Y DI WW
Sbjct: 731 HYLIPYPTDYDDICWW 746


>SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 21 YFEWKLSLEDYWQQPLVIALMRESRKILFSHEIYKYPKVYHDISW 65
          Y E KL L+DY    +V+   R +R +  + E Y   K     SW
Sbjct: 6  YKEDKLRLKDYKTGRIVVTWNRFARSLKEAFEFYTEAKQAEFYSW 50


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 44   SRKILFSHEIYKYPKVYHDISWWILYAKYL 73
            SR   +S++  K PK    + WW+ Y  +L
Sbjct: 2170 SRTSFWSNKRSKNPKKIKSLPWWMTYIGWL 2199


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 23   EWKLSLEDYWQQPLVIALM--RESRKILFSHEIYK-YP 57
            EW L +  +W+ P+V+ L+   + R++L    +++ YP
Sbjct: 2749 EWLLRVHLWWKMPVVLILVYQLQKRELLMRDNLFEAYP 2786


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.141    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,726
Number of Sequences: 59808
Number of extensions: 89293
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 8
length of query: 73
length of database: 16,821,457
effective HSP length: 51
effective length of query: 22
effective length of database: 13,771,249
effective search space: 302967478
effective search space used: 302967478
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)