GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002046-TA|BGIBMGA002046-PA|undefined
         (73 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66520-7|CAA91383.1|  269|Caenorhabditis elegans Hypothetical pr...    27   1.6  
U40028-1|AAA81114.2|  392|Caenorhabditis elegans Fucosyl transfe...    26   3.7  
AJ745074-1|CAG32980.1|  392|Caenorhabditis elegans alpha1,3-fuco...    26   3.7  
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr...    25   4.9  
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr...    25   4.9  
Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical p...    25   6.5  
AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical ...    25   6.5  
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli...    25   8.5  
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes...    25   8.5  

>Z66520-7|CAA91383.1|  269|Caenorhabditis elegans Hypothetical
           protein F49E12.9 protein.
          Length = 269

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 32  WQ--QPLVIALMRESRKILFSHEIYKYPKVY 60
           WQ  + +VI+++ E     +SH ++ +PK+Y
Sbjct: 107 WQIFRDIVISILCEEIGFYYSHRLFHHPKIY 137


>U40028-1|AAA81114.2|  392|Caenorhabditis elegans Fucosyl
           transferase protein 6 protein.
          Length = 392

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 53  IYKYPKVYHDISWW 66
           I K PK Y D++WW
Sbjct: 364 ILKNPKSYKDVAWW 377


>AJ745074-1|CAG32980.1|  392|Caenorhabditis elegans
           alpha1,3-fucosyltransferase protein.
          Length = 392

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 53  IYKYPKVYHDISWW 66
           I K PK Y D++WW
Sbjct: 364 ILKNPKSYKDVAWW 377


>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical
           protein W07E11.1 protein.
          Length = 2207

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 10  FRELQDVTDTGYFEWKLSLEDYWQQPLVIALMRESRKILFSHEIYKY 56
           F + + +  +G F W+   E +  +PL IA ++ + ++  S    +Y
Sbjct: 855 FGDSKTLVASGTFHWRAGGEKHINEPLAIAKLQAAARLNNSKTFQEY 901


>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical
           protein W07E11.1 protein.
          Length = 2207

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 10  FRELQDVTDTGYFEWKLSLEDYWQQPLVIALMRESRKILFSHEIYKY 56
           F + + +  +G F W+   E +  +PL IA ++ + ++  S    +Y
Sbjct: 855 FGDSKTLVASGTFHWRAGGEKHINEPLAIAKLQAAARLNNSKTFQEY 901


>Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical
           protein T07C4.11 protein.
          Length = 367

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 6   SGNLFRELQDVTDTGYFEWKLSLEDYWQQPLVIALMRESRKILF 49
           S NLFR    VT++G+ +     E  ++Q  VI  ++E  +I+F
Sbjct: 178 SENLFRS--SVTESGFVDDIREYERLFEQAKVIKFVQEPGEIVF 219


>AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical
           protein F13H6.1 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 12  ELQDVTDTGYFEWKLSLEDYWQQPLVIALMRE 43
           +L  V+ +  F+   S+ + W QP ++A M+E
Sbjct: 330 QLPTVSSSAGFQTSGSMPNVWMQPSMLAAMQE 361


>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
            domain-containingprotein Y54G2A.25 protein.
          Length = 1187

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 4    LPSGNLFRELQDVTDTGYFEWKLSLEDYWQQP---LVIALMRESRKILFSHEIYKYP 57
            +P   +FR      D+   EW+ +    W+ P     +    ES K  F  EI   P
Sbjct: 1015 IPDAPIFRVKNISLDSFVVEWQPNNHSVWKMPGAAFFVNYTAESSKTWFQSEIIYLP 1071


>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
            molecule homologprotein 2, isoform a protein.
          Length = 1187

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 4    LPSGNLFRELQDVTDTGYFEWKLSLEDYWQQP---LVIALMRESRKILFSHEIYKYP 57
            +P   +FR      D+   EW+ +    W+ P     +    ES K  F  EI   P
Sbjct: 1015 IPDAPIFRVKNISLDSFVVEWQPNNHSVWKMPGAAFFVNYTAESSKTWFQSEIIYLP 1071


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.141    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,483
Number of Sequences: 27539
Number of extensions: 68992
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 9
length of query: 73
length of database: 12,573,161
effective HSP length: 53
effective length of query: 20
effective length of database: 11,113,594
effective search space: 222271880
effective search space used: 222271880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 51 (24.6 bits)