GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002046-TA|BGIBMGA002046-PA|undefined
         (73 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   2.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   4.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    19   4.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   4.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      19   6.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 4    LPSGNLFRELQDVTDTGYF 22
            LP G+LF +  D TD G +
Sbjct: 1326 LPEGSLFIKEVDRTDAGEY 1344


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 4/12 (33%), Positives = 12/12 (100%)

Query: 62  DISWWILYAKYL 73
           ++++WI++A+Y+
Sbjct: 417 NVTYWIMFAEYI 428


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 57  PKVYHDISW 65
           P+++HD  W
Sbjct: 511 PRIHHDAEW 519


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 57  PKVYHDISW 65
           P+++HD  W
Sbjct: 426 PRIHHDAEW 434


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 57  PKVYHDISW 65
           P+++HD  W
Sbjct: 745 PRIHHDAEW 753


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 58  KVYHDISWWILYAKY 72
           K Y++I +++L A Y
Sbjct: 190 KTYNNIDYYLLAANY 204


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.141    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,436
Number of Sequences: 429
Number of extensions: 694
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 73
length of database: 140,377
effective HSP length: 46
effective length of query: 27
effective length of database: 120,643
effective search space:  3257361
effective search space used:  3257361
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.7 bits)
S2: 36 (18.6 bits)