Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002045-TA|BGIBMGA002045-PA|IPR006759|Glycosyl
transferase, family 54
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    27   3.9  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   8.9  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   8.9  

>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 154 PDVTYILKLARQIEIMFPREISDGVIEIL--APSPAYYPELEDLCPTLGDSPKRAMWRTK 211
           P+ TY+   A      FP  +    +E+   AP  A  P    +  T   +P+ A W ++
Sbjct: 272 PNGTYMYPAAVSTNRTFPLSLPGQSVELAWDAPGMAVGPNSSYITSTSAGTPRYAAWISQ 331

Query: 212 QNLDNIYLMAYAISKGVYY 230
            N+    L     + GV Y
Sbjct: 332 LNVTYAPLNITGNNSGVTY 350


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 43  APYPPGYSEEAMNMIHNLTGTRVLNGLQPRYIHRMQLPFLVQILTHLL 90
           A YPP YSE  M +  N+   +V     P Y      P  + +L+HLL
Sbjct: 392 AGYPPFYSENPMKLYENILEGKV---NYPSYFS----PASIDLLSHLL 432


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 298 DWLLESYLADRVCSIDKKSLCPAAAKKYKRLEKKSCAESKLRVRPRYKVSLFQHIG 353
           D+L+++ +  R+  + ++++ PAA+   + L K +   SK    P++   LF+ IG
Sbjct: 564 DYLMKAVM--RIIIMSQEAILPAASLLLQHLTKITEEVSKNPSNPKFNHYLFESIG 617


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,253
Number of Sequences: 5004
Number of extensions: 89514
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 3
length of query: 432
length of database: 2,362,478
effective HSP length: 75
effective length of query: 357
effective length of database: 1,987,178
effective search space: 709422546
effective search space used: 709422546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)