GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002045-TA|BGIBMGA002045-PA|IPR006759|Glycosyl
transferase, family 54
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0023 + 15558890-15559117,15559229-15560134                       31   1.4  
09_02_0412 - 8731559-8731651,8731729-8731762,8732250-8732501,873...    31   1.8  
06_03_1196 + 28316186-28316290,28317529-28317633,28317725-283177...    29   5.5  
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908...    29   7.2  
11_06_0145 - 20615044-20617167,20617444-20618076                       29   9.5  
10_08_0514 + 18465474-18465760,18465888-18465978,18466670-184667...    29   9.5  

>06_03_0023 + 15558890-15559117,15559229-15560134
          Length = 377

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 183 APSPAYYPELEDLCPTL--GDSPKRAM-----WRTKQNLDNIYLMAYAISKGVYYLMLED 235
           A  PA+  +L  +CP    GD P+++       RT + LDN+Y      S+G   LM  D
Sbjct: 225 ALEPAFAEKLRKVCPPRKDGDDPEQSPKVSFDGRTSEKLDNVYYSELLASRG---LMTSD 281

Query: 236 DVTTK 240
           D   K
Sbjct: 282 DALIK 286


>09_02_0412 -
           8731559-8731651,8731729-8731762,8732250-8732501,
           8732585-8733996
          Length = 596

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 149 ILVGEPDVTYILKLARQIEIMFPREISDGVIEILA-PSPAYYPELED 194
           I V EP+V ++  +   IE +   E      EI   PSPA YPE++D
Sbjct: 275 ITVAEPEVQFVASVGTDIEEVPGLEWDGTEPEIFEDPSPAKYPEVQD 321


>06_03_1196 +
           28316186-28316290,28317529-28317633,28317725-28317796,
           28318023-28318259,28318608-28318718,28318810-28318923,
           28319272-28319373,28320238-28320306,28320447-28320553,
           28321128-28321224,28321347-28321466,28321663-28321847,
           28322065-28322353
          Length = 570

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 246 EMKGYIKTTTEKTPHWIFIEFCQVGAIGKVFRTRDLLPFVTY-SQIFYSNMPIDWLLESY 304
           +++  I+ TT+   H IF   CQ       FR R ++ +    +Q+F  NMP  ++L   
Sbjct: 351 DLQNNIRITTKPINHQIFYASCQAVMYILCFRLRSIMDYPNLKAQLF--NMPFGYILTHP 408

Query: 305 LAD-RVC 310
           L   +VC
Sbjct: 409 LEPLKVC 415


>12_01_0919 -
           9086879-9087064,9087842-9087923,9088357-9089553,
           9089598-9089961,9090086-9090188,9090234-9090479
          Length = 725

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 144 SVVIVILVGEPDVTYILKLARQIEIMFPREISDGVIEILA-PSPAYYPELED 194
           +V + I V EP+V ++  +  +IE +   E     +EI   PSPA  PE+++
Sbjct: 553 NVPMEITVAEPEVQFVASVGSEIEEVPGLEWDGTKLEIFENPSPAKDPEVQE 604


>11_06_0145 - 20615044-20617167,20617444-20618076
          Length = 918

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 67  NGLQPRYIHRMQLPFLVQILTHLLNDPF---SLWPLYHLSGARHYMDFVIGIPTVKRD 121
           +G +     R++L +    LT +L D F   SLWP  H+   R  +DF IG   ++ D
Sbjct: 375 SGSEEATFFRLKLAY--DSLTGILKDCFKLCSLWPEGHIFNQRKLVDFWIGSGLIQGD 430


>10_08_0514 +
           18465474-18465760,18465888-18465978,18466670-18466767,
           18466852-18466949,18468192-18468321,18468410-18468597,
           18470291-18470323,18470627-18471000,18471116-18471294,
           18471421-18471532,18471655-18471771,18471875-18472189,
           18472405-18472743
          Length = 786

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 383 PAQKITTTIEDYYQHSIQNAYEGIDFFWGKKPKKGDTLEFWYGRP 427
           P+ K  ++   +Y    + A +G+      KPK GD L FW  RP
Sbjct: 247 PSSKANSSSSPFYNELSECAKKGL----AVKPKMGDALLFWSMRP 287


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,319,687
Number of Sequences: 37544
Number of extensions: 511707
Number of successful extensions: 954
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 7
length of query: 432
length of database: 14,793,348
effective HSP length: 84
effective length of query: 348
effective length of database: 11,639,652
effective search space: 4050598896
effective search space used: 4050598896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)