GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002045-TA|BGIBMGA002045-PA|IPR006759|Glycosyl
transferase, family 54
         (432 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35639-2|CAA84694.1|  351|Caenorhabditis elegans Hypothetical pr...    29   8.5  

>Z35639-2|CAA84694.1|  351|Caenorhabditis elegans Hypothetical
           protein D2045.5 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 261 WIFIEFCQVGAIGKVFRTRDLLPFVTYS 288
           W  +E    G +G VF+ RDL  F TY+
Sbjct: 17  WKIVEKLGEGGMGAVFKVRDLTRFQTYA 44


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,876,809
Number of Sequences: 27539
Number of extensions: 473827
Number of successful extensions: 853
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 1
length of query: 432
length of database: 12,573,161
effective HSP length: 83
effective length of query: 349
effective length of database: 10,287,424
effective search space: 3590310976
effective search space used: 3590310976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)