GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002044-TA|BGIBMGA002044-PA|undefined
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    28   1.5  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   3.5  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)

Query: 156 IQVPEWKQNFIPAWVKEGVPGEKY 179
           I +P+ K++F+ AW+ E + GEKY
Sbjct: 40  IWIPDSKESFVKAWIVEDL-GEKY 62


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 85  WKSEWKKEKEPAWKTEQVQQWKEEQVPAWKVVQKPIW 121
           W S +KK  +  W   + Q W   Q+P WK++++  W
Sbjct: 427 WDSWFKKMGD--WCISR-QIWWGHQIPVWKILEEDKW 460



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 81  KKLAWKSEWKKEKEPAWKTEQVQQWKEEQVPAWKVVQKPIWKEVQVPVWK 130
           KK   KS  K +  P+   ++   W ++ +  W  + + IW   Q+PVWK
Sbjct: 406 KKEVLKSSNKLKLVPSLARKEWDSWFKK-MGDW-CISRQIWWGHQIPVWK 453


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.130    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,202,213
Number of Sequences: 5004
Number of extensions: 39154
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 4
length of query: 319
length of database: 2,362,478
effective HSP length: 73
effective length of query: 246
effective length of database: 1,997,186
effective search space: 491307756
effective search space used: 491307756
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)