GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002044-TA|BGIBMGA002044-PA|undefined
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0006 - 15306302-15306805,15307758-15307893,15308909-153090...    29   6.5  
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657           29   6.5  
07_03_0016 - 12474773-12475249                                         28   8.6  
01_06_0143 - 26916490-26917719                                         28   8.6  

>06_03_0006 -
           15306302-15306805,15307758-15307893,15308909-15309087,
           15310097-15310230,15310712-15311210,15311372-15311720,
           15314597-15314649
          Length = 617

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 87  SEWKKEKEPAWKTEQVQQWKEEQVP-AWKVVQKPIWKEVQVPVWKEXXXXXXXXXXXXXX 145
           S W    E  W      QW + Q P +  V   P         W+               
Sbjct: 508 SSWASASEDQWHAPHDIQWGDNQRPRSSGVPPSPSGWRSSSSHWEFGEITWRMDTLDMQT 567

Query: 146 XEIQVPVTKDI-QVPEWKQN 164
            EIQ  +T+ I Q+ EW+QN
Sbjct: 568 EEIQYNLTEHIAQMQEWQQN 587


>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
          Length = 1136

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 15 RVLTATIWVVLAIAASVAVPIQDVSSDTELTR-EKRSPGGWHSPPP 59
          R+L A +W +  +AA+ A    DV     LT    R   G  SPPP
Sbjct: 7  RLLLAAVWPLAWLAAAAAAAAVDVDDGLALTAFMARMSTGSGSPPP 52


>07_03_0016 - 12474773-12475249
          Length = 158

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 87  SEWKKEKEPAWKTEQVQQWKEEQVPAWK-VVQKPIWKEVQVPVWKEXXXXXXXXXXXXXX 145
           S W    E  W+     QW + Q P    V   P         W                
Sbjct: 45  SSWASASEDWWRAPHDIQWGDYQPPRPSGVPPSPSEWRSSFSCWDLGEITRRMDTLDVQT 104

Query: 146 XEIQVPVTKDI-QVPEWKQN 164
            EIQ  +T+ I Q  EW+QN
Sbjct: 105 GEIQYNLTEHIAQTQEWQQN 124


>01_06_0143 - 26916490-26917719
          Length = 409

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 172 EGVPGEKYLGKDDHGWEYTSHDLWR 196
           +GV G ++ G  D GW   + D WR
Sbjct: 83  DGVRGTRFCGVHDGGWAAVAADTWR 107


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.130    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,205,533
Number of Sequences: 37544
Number of extensions: 277172
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 4
length of query: 319
length of database: 14,793,348
effective HSP length: 82
effective length of query: 237
effective length of database: 11,714,740
effective search space: 2776393380
effective search space used: 2776393380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)