GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002044-TA|BGIBMGA002044-PA|undefined
         (319 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22173-1|CAA80125.1|  398|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z27079-1|CAA81593.2|  411|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U88172-8|AAB42258.1|  312|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z22173-1|CAA80125.1|  398|Caenorhabditis elegans Hypothetical
           protein C15H7.3 protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 34  PIQDVSSDTELTREKRSPGGWHSPPPEGXXXXXXXXXXXXXQI--WKTEKKLAWKSEWKK 91
           P  + S  +  TR+ R P G      E              ++   K EKK   K E K+
Sbjct: 34  PAGEKSQKSRRTRKSRGPKGNGFTSRETIQPSSSGQSEGTTRMDDQKDEKKDDKKEEKKE 93

Query: 92  EKEPAWKTEQVQQWKEEQVPAWKVV 116
           E++   K E  + W EE+ PA ++V
Sbjct: 94  ERKEEKKEEVKEPWSEEE-PAKRMV 117


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 80  EKKLAWKSEWKKEKEPAWKTEQVQQWKEEQVPAWKVVQKP 119
           EKK   K E K EKE   KTE  ++ ++E+    KV + P
Sbjct: 139 EKKKEKKEEKKDEKEKKEKTEDDKEKEKEKTKEEKVKEDP 178


>Z27079-1|CAA81593.2|  411|Caenorhabditis elegans Hypothetical
           protein T05G5.1 protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 75  QIWKTEKKLAWKSEWKKEKEPAWKTEQVQQW-KEEQVPAWKVVQK 118
           + W    K   +  W  E E   KTE+  ++  EE    W +V+K
Sbjct: 343 EYWDETSKKTDEDSWTAENEGTKKTEEADEYGMEEGTEGWMMVKK 387


>U88172-8|AAB42258.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK354.3 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/46 (41%), Positives = 25/46 (54%)

Query: 78  KTEKKLAWKSEWKKEKEPAWKTEQVQQWKEEQVPAWKVVQKPIWKE 123
           K EKK   K E K EK+ A K E+ ++ KEE+    K  +K   KE
Sbjct: 230 KEEKKDDKKDEKKDEKKEAKKEEKKEEKKEEKKEEKKEEKKDDKKE 275


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.130    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,581,862
Number of Sequences: 27539
Number of extensions: 225197
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 12
length of query: 319
length of database: 12,573,161
effective HSP length: 81
effective length of query: 238
effective length of database: 10,342,502
effective search space: 2461515476
effective search space used: 2461515476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)